Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3655 and Atu3656 are separated by 180 nucleotides Atu3656 and Atu3657 are separated by 268 nucleotides Atu3657 and Atu3658 are separated by 262 nucleotides
Atu3655: Atu3655 - antioxidant protein, at 705,579 to 706,145
Atu3655
Atu3656: Atu3656 - acetyltransferase, at 706,326 to 706,712
Atu3656
Atu3657: Atu3657 - hypothetical protein, at 706,981 to 707,229
Atu3657
Atu3658: Atu3658 - MerR family transcriptional regulator, at 707,492 to 708,577
Atu3658
Position (kb) 706
707
708 Strain fitness (log2 ratio) -1
0
1
2 at 705.986 kb on + strand, within Atu3655 at 706.066 kb on + strand, within Atu3655 at 706.074 kb on - strand, within Atu3655 at 706.134 kb on + strand at 706.179 kb on + strand at 706.267 kb on - strand at 706.334 kb on + strand at 706.382 kb on + strand, within Atu3656 at 706.389 kb on - strand, within Atu3656 at 706.438 kb on + strand, within Atu3656 at 706.438 kb on + strand, within Atu3656 at 706.438 kb on + strand, within Atu3656 at 706.446 kb on - strand, within Atu3656 at 706.446 kb on - strand, within Atu3656 at 706.459 kb on + strand, within Atu3656 at 706.499 kb on + strand, within Atu3656 at 706.507 kb on - strand, within Atu3656 at 706.507 kb on - strand, within Atu3656 at 706.509 kb on + strand, within Atu3656 at 706.512 kb on - strand, within Atu3656 at 706.524 kb on - strand, within Atu3656 at 706.534 kb on + strand, within Atu3656 at 706.682 kb on + strand at 706.683 kb on + strand at 706.687 kb on + strand at 706.687 kb on + strand at 706.690 kb on - strand at 706.695 kb on - strand at 706.703 kb on + strand at 706.766 kb on - strand at 706.835 kb on + strand at 706.858 kb on + strand at 706.983 kb on + strand at 707.012 kb on + strand, within Atu3657 at 707.012 kb on + strand, within Atu3657 at 707.020 kb on - strand, within Atu3657 at 707.169 kb on - strand, within Atu3657 at 707.169 kb on - strand, within Atu3657 at 707.171 kb on + strand, within Atu3657 at 707.226 kb on - strand at 707.301 kb on - strand at 707.321 kb on + strand at 707.321 kb on + strand at 707.359 kb on - strand at 707.365 kb on + strand at 707.432 kb on - strand at 707.541 kb on + strand at 707.541 kb on + strand at 707.541 kb on + strand at 707.541 kb on + strand at 707.549 kb on - strand at 707.549 kb on - strand at 707.549 kb on - strand at 707.549 kb on - strand at 707.602 kb on - strand, within Atu3658 at 707.641 kb on - strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.738 kb on + strand, within Atu3658 at 707.779 kb on - strand, within Atu3658 at 707.862 kb on + strand, within Atu3658 at 707.915 kb on - strand, within Atu3658 at 707.917 kb on - strand, within Atu3658 at 707.947 kb on - strand, within Atu3658 at 707.947 kb on - strand, within Atu3658 at 707.963 kb on + strand, within Atu3658 at 708.000 kb on - strand, within Atu3658 at 708.025 kb on - strand, within Atu3658 at 708.069 kb on + strand, within Atu3658 at 708.074 kb on + strand, within Atu3658 at 708.079 kb on + strand, within Atu3658 at 708.079 kb on + strand, within Atu3658 at 708.127 kb on + strand, within Atu3658 at 708.136 kb on + strand, within Atu3658 at 708.180 kb on + strand, within Atu3658 at 708.188 kb on - strand, within Atu3658 at 708.201 kb on + strand, within Atu3658 at 708.216 kb on + strand, within Atu3658
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 705,986 + Atu3655 0.72 -0.5 706,066 + Atu3655 0.86 -0.1 706,074 - Atu3655 0.87 -0.5 706,134 + +0.6 706,179 + +0.1 706,267 - -0.9 706,334 + -0.2 706,382 + Atu3656 0.14 +0.3 706,389 - Atu3656 0.16 -0.2 706,438 + Atu3656 0.29 -0.0 706,438 + Atu3656 0.29 +0.2 706,438 + Atu3656 0.29 -0.1 706,446 - Atu3656 0.31 +0.1 706,446 - Atu3656 0.31 -1.0 706,459 + Atu3656 0.34 +0.2 706,499 + Atu3656 0.45 +0.2 706,507 - Atu3656 0.47 +0.2 706,507 - Atu3656 0.47 -0.8 706,509 + Atu3656 0.47 -0.0 706,512 - Atu3656 0.48 +0.1 706,524 - Atu3656 0.51 +0.1 706,534 + Atu3656 0.54 -0.3 706,682 + -0.5 706,683 + +0.0 706,687 + -0.3 706,687 + +0.2 706,690 - -0.3 706,695 - +0.7 706,703 + +1.1 706,766 - +0.0 706,835 + +0.0 706,858 + -0.1 706,983 + +1.3 707,012 + Atu3657 0.12 +0.2 707,012 + Atu3657 0.12 +0.3 707,020 - Atu3657 0.16 +0.4 707,169 - Atu3657 0.76 -0.0 707,169 - Atu3657 0.76 +0.3 707,171 + Atu3657 0.76 +0.5 707,226 - +0.2 707,301 - +1.4 707,321 + +0.6 707,321 + -0.0 707,359 - +0.5 707,365 + -0.1 707,432 - -1.0 707,541 + -0.4 707,541 + -0.2 707,541 + +0.3 707,541 + +0.1 707,549 - +0.3 707,549 - -0.1 707,549 - +0.5 707,549 - +0.5 707,602 - Atu3658 0.10 -0.4 707,641 - Atu3658 0.14 -0.4 707,691 + Atu3658 0.18 +0.2 707,691 + Atu3658 0.18 -1.1 707,691 + Atu3658 0.18 -0.3 707,691 + Atu3658 0.18 -1.0 707,691 + Atu3658 0.18 +1.3 707,691 + Atu3658 0.18 -0.3 707,691 + Atu3658 0.18 -0.3 707,691 + Atu3658 0.18 +0.0 707,691 + Atu3658 0.18 +0.3 707,691 + Atu3658 0.18 +0.3 707,691 + Atu3658 0.18 -0.3 707,691 + Atu3658 0.18 +0.7 707,691 + Atu3658 0.18 +0.0 707,691 + Atu3658 0.18 +0.3 707,691 + Atu3658 0.18 +0.2 707,691 + Atu3658 0.18 -0.5 707,691 + Atu3658 0.18 +0.0 707,691 + Atu3658 0.18 +0.4 707,691 + Atu3658 0.18 +1.1 707,691 + Atu3658 0.18 +0.3 707,691 + Atu3658 0.18 +0.0 707,691 + Atu3658 0.18 -1.5 707,691 + Atu3658 0.18 -0.9 707,691 + Atu3658 0.18 +0.3 707,691 + Atu3658 0.18 +0.4 707,691 + Atu3658 0.18 +1.8 707,691 + Atu3658 0.18 +0.6 707,691 + Atu3658 0.18 -0.2 707,691 + Atu3658 0.18 +0.1 707,691 + Atu3658 0.18 -1.5 707,691 + Atu3658 0.18 +0.0 707,691 + Atu3658 0.18 -0.3 707,691 + Atu3658 0.18 -0.5 707,691 + Atu3658 0.18 -0.1 707,691 + Atu3658 0.18 -0.5 707,699 - Atu3658 0.19 -0.5 707,699 - Atu3658 0.19 +0.8 707,699 - Atu3658 0.19 +0.2 707,699 - Atu3658 0.19 +0.1 707,699 - Atu3658 0.19 -0.2 707,699 - Atu3658 0.19 +0.0 707,699 - Atu3658 0.19 +0.6 707,699 - Atu3658 0.19 +1.5 707,699 - Atu3658 0.19 -0.6 707,699 - Atu3658 0.19 +0.5 707,699 - Atu3658 0.19 -0.0 707,699 - Atu3658 0.19 +1.0 707,699 - Atu3658 0.19 +1.3 707,699 - Atu3658 0.19 -0.5 707,699 - Atu3658 0.19 -0.5 707,699 - Atu3658 0.19 +0.2 707,699 - Atu3658 0.19 +0.4 707,699 - Atu3658 0.19 -0.8 707,699 - Atu3658 0.19 +1.3 707,699 - Atu3658 0.19 -0.0 707,699 - Atu3658 0.19 -0.7 707,699 - Atu3658 0.19 +0.4 707,699 - Atu3658 0.19 +1.0 707,699 - Atu3658 0.19 +0.8 707,699 - Atu3658 0.19 -0.2 707,699 - Atu3658 0.19 +0.3 707,738 + Atu3658 0.23 +0.1 707,779 - Atu3658 0.26 +0.2 707,862 + Atu3658 0.34 +0.2 707,915 - Atu3658 0.39 +0.3 707,917 - Atu3658 0.39 +0.3 707,947 - Atu3658 0.42 -0.1 707,947 - Atu3658 0.42 +1.0 707,963 + Atu3658 0.43 +0.9 708,000 - Atu3658 0.47 +0.3 708,025 - Atu3658 0.49 -0.0 708,069 + Atu3658 0.53 -0.7 708,074 + Atu3658 0.54 +0.4 708,079 + Atu3658 0.54 +1.2 708,079 + Atu3658 0.54 -0.2 708,127 + Atu3658 0.58 +0.8 708,136 + Atu3658 0.59 +1.5 708,180 + Atu3658 0.63 +0.0 708,188 - Atu3658 0.64 -0.1 708,201 + Atu3658 0.65 +0.5 708,216 + Atu3658 0.67 +0.3
Or see this region's nucleotide sequence