Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3646 and Atu3647 are separated by 130 nucleotides Atu3647 and Atu3648 are separated by 415 nucleotides Atu3648 and Atu3650 are separated by 482 nucleotides
Atu3646: Atu3646 - hypothetical protein, at 699,476 to 699,901
Atu3646
Atu3647: Atu3647 - hypothetical protein, at 700,032 to 700,277
Atu3647
Atu3648: Atu3648 - hypothetical protein, at 700,693 to 700,914
Atu3648
Atu3650: Atu3650 - hypothetical protein, at 701,397 to 701,972
Atu3650
Position (kb) 700
701 Strain fitness (log2 ratio) -2
-1
0
1
2 at 699.719 kb on + strand, within Atu3646 at 699.727 kb on - strand, within Atu3646 at 699.727 kb on - strand, within Atu3646 at 699.732 kb on - strand, within Atu3646 at 699.776 kb on + strand, within Atu3646 at 699.776 kb on + strand, within Atu3646 at 699.776 kb on + strand, within Atu3646 at 699.784 kb on - strand, within Atu3646 at 699.784 kb on - strand, within Atu3646 at 699.870 kb on + strand at 699.938 kb on - strand at 699.938 kb on - strand at 699.940 kb on + strand at 699.940 kb on + strand at 699.948 kb on - strand at 699.948 kb on - strand at 699.955 kb on - strand at 700.001 kb on + strand at 700.032 kb on - strand at 700.060 kb on + strand, within Atu3647 at 700.089 kb on + strand, within Atu3647 at 700.096 kb on - strand, within Atu3647 at 700.097 kb on - strand, within Atu3647 at 700.192 kb on - strand, within Atu3647 at 700.212 kb on + strand, within Atu3647 at 700.218 kb on - strand, within Atu3647 at 700.297 kb on + strand at 700.361 kb on + strand at 700.361 kb on + strand at 700.429 kb on + strand at 700.462 kb on + strand at 700.470 kb on - strand at 700.479 kb on + strand at 700.529 kb on + strand at 700.537 kb on - strand at 700.546 kb on + strand at 700.546 kb on + strand at 700.546 kb on + strand at 700.547 kb on - strand at 700.554 kb on - strand at 700.673 kb on - strand at 700.723 kb on - strand, within Atu3648 at 700.734 kb on - strand, within Atu3648 at 700.750 kb on + strand, within Atu3648 at 700.759 kb on - strand, within Atu3648 at 700.775 kb on - strand, within Atu3648 at 700.909 kb on + strand at 700.917 kb on - strand at 700.917 kb on - strand at 700.919 kb on + strand at 700.985 kb on - strand at 701.024 kb on + strand at 701.095 kb on + strand at 701.105 kb on + strand at 701.133 kb on - strand at 701.175 kb on + strand at 701.183 kb on - strand at 701.243 kb on + strand at 701.281 kb on + strand at 701.379 kb on + strand at 701.467 kb on + strand, within Atu3650 at 701.471 kb on - strand, within Atu3650 at 701.499 kb on + strand, within Atu3650 at 701.527 kb on + strand, within Atu3650 at 701.529 kb on + strand, within Atu3650 at 701.596 kb on - strand, within Atu3650 at 701.615 kb on - strand, within Atu3650 at 701.699 kb on - strand, within Atu3650 at 701.718 kb on + strand, within Atu3650 at 701.718 kb on + strand, within Atu3650 at 701.750 kb on - strand, within Atu3650 at 701.751 kb on + strand, within Atu3650 at 701.771 kb on - strand, within Atu3650 at 701.808 kb on + strand, within Atu3650 at 701.809 kb on - strand, within Atu3650 at 701.876 kb on + strand, within Atu3650
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 699,719 + Atu3646 0.57 -0.1 699,727 - Atu3646 0.59 +0.4 699,727 - Atu3646 0.59 +0.2 699,732 - Atu3646 0.60 +0.0 699,776 + Atu3646 0.70 +0.2 699,776 + Atu3646 0.70 -0.0 699,776 + Atu3646 0.70 -0.1 699,784 - Atu3646 0.72 -0.8 699,784 - Atu3646 0.72 +0.5 699,870 + +0.1 699,938 - -0.4 699,938 - +0.1 699,940 + +0.3 699,940 + -0.6 699,948 - +0.6 699,948 - -0.2 699,955 - +0.2 700,001 + -0.2 700,032 - +0.2 700,060 + Atu3647 0.11 +0.9 700,089 + Atu3647 0.23 -0.5 700,096 - Atu3647 0.26 +0.8 700,097 - Atu3647 0.26 +0.5 700,192 - Atu3647 0.65 -0.2 700,212 + Atu3647 0.73 -0.8 700,218 - Atu3647 0.76 -0.9 700,297 + -0.3 700,361 + -0.5 700,361 + +0.1 700,429 + +2.0 700,462 + +0.4 700,470 - -0.0 700,479 + +0.4 700,529 + +1.4 700,537 - +0.0 700,546 + +0.8 700,546 + +0.2 700,546 + +1.7 700,547 - -0.1 700,554 - -0.1 700,673 - +1.1 700,723 - Atu3648 0.14 +0.2 700,734 - Atu3648 0.18 +1.5 700,750 + Atu3648 0.26 +1.1 700,759 - Atu3648 0.30 +0.3 700,775 - Atu3648 0.37 +0.1 700,909 + +0.5 700,917 - +0.5 700,917 - -0.9 700,919 + -0.1 700,985 - -0.1 701,024 + -0.6 701,095 + +1.5 701,105 + +0.7 701,133 - +0.5 701,175 + +0.3 701,183 - +0.1 701,243 + -0.1 701,281 + -0.0 701,379 + -0.3 701,467 + Atu3650 0.12 +0.1 701,471 - Atu3650 0.13 +0.7 701,499 + Atu3650 0.18 +0.5 701,527 + Atu3650 0.23 -0.2 701,529 + Atu3650 0.23 -0.1 701,596 - Atu3650 0.35 -0.1 701,615 - Atu3650 0.38 -0.3 701,699 - Atu3650 0.52 +0.0 701,718 + Atu3650 0.56 +0.6 701,718 + Atu3650 0.56 -0.0 701,750 - Atu3650 0.61 -0.3 701,751 + Atu3650 0.61 -1.2 701,771 - Atu3650 0.65 -2.4 701,808 + Atu3650 0.71 -0.8 701,809 - Atu3650 0.72 -0.1 701,876 + Atu3650 0.83 +0.6
Or see this region's nucleotide sequence