Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3603 and Atu3604 are separated by 142 nucleotides Atu3604 and Atu3605 are separated by 70 nucleotides Atu3605 and Atu3606 are separated by 201 nucleotides Atu3606 and Atu3607 overlap by 8 nucleotides
Atu3603: Atu3603 - two component response regulator, at 659,474 to 659,833
Atu3603
Atu3604: Atu3604 - hypoxanthine phosphoribosyltransferase, at 659,976 to 660,518
Atu3604
Atu3605: Atu3605 - hypothetical protein, at 660,589 to 661,260
Atu3605
Atu3606: Atu3606 - cell division ATP-binding protein, at 661,462 to 662,121
Atu3606
Atu3607: Atu3607 - cell division protein, at 662,114 to 663,121
Atu3607
Position (kb) 660
661
662 Strain fitness (log2 ratio) -1
0
1 at 659.589 kb on - strand, within Atu3603 at 659.752 kb on + strand, within Atu3603 at 659.875 kb on + strand at 659.928 kb on - strand at 659.958 kb on - strand at 660.393 kb on - strand, within Atu3604 at 660.444 kb on - strand, within Atu3604 at 660.478 kb on + strand at 660.486 kb on - strand at 660.696 kb on - strand, within Atu3605 at 660.698 kb on + strand, within Atu3605 at 660.778 kb on - strand, within Atu3605 at 660.908 kb on - strand, within Atu3605 at 660.970 kb on - strand, within Atu3605 at 660.990 kb on + strand, within Atu3605 at 661.044 kb on + strand, within Atu3605 at 661.187 kb on + strand, within Atu3605 at 661.250 kb on + strand at 661.351 kb on - strand at 661.423 kb on - strand at 661.459 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 659,589 - Atu3603 0.32 +1.0 659,752 + Atu3603 0.77 -0.5 659,875 + -0.4 659,928 - -0.1 659,958 - -0.7 660,393 - Atu3604 0.77 -0.3 660,444 - Atu3604 0.86 -0.0 660,478 + -0.2 660,486 - -1.1 660,696 - Atu3605 0.16 +0.5 660,698 + Atu3605 0.16 -0.2 660,778 - Atu3605 0.28 +0.2 660,908 - Atu3605 0.47 +0.1 660,970 - Atu3605 0.57 +1.1 660,990 + Atu3605 0.60 -0.2 661,044 + Atu3605 0.68 +0.1 661,187 + Atu3605 0.89 +0.3 661,250 + -0.1 661,351 - -0.2 661,423 - -0.5 661,459 + +0.2
Or see this region's nucleotide sequence