Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0762 and Atu0763 overlap by 12 nucleotides Atu0763 and Atu0764 are separated by 6 nucleotides Atu0764 and Atu0765 are separated by 192 nucleotides
Atu0762: Atu0762 - hypothetical protein, at 758,574 to 758,882
Atu0762
Atu0763: Atu0763 - hydrolase, at 758,871 to 759,545
Atu0763
Atu0764: Atu0764 - hypothetical protein, at 759,552 to 759,989
Atu0764
Atu0765: Atu0765 - TldD, at 760,182 to 761,597
Atu0765
Position (kb) 759
760 Strain fitness (log2 ratio) -1
0
1
2 at 758.700 kb on + strand, within Atu0762 at 758.726 kb on - strand, within Atu0762 at 758.831 kb on - strand, within Atu0762 at 758.885 kb on + strand at 759.109 kb on + strand, within Atu0763 at 759.154 kb on + strand, within Atu0763 at 759.188 kb on + strand, within Atu0763 at 759.240 kb on + strand, within Atu0763 at 759.248 kb on + strand, within Atu0763 at 759.248 kb on - strand, within Atu0763 at 759.249 kb on + strand, within Atu0763 at 759.278 kb on + strand, within Atu0763 at 759.281 kb on - strand, within Atu0763 at 759.582 kb on + strand at 759.605 kb on - strand, within Atu0764 at 759.681 kb on + strand, within Atu0764 at 759.807 kb on + strand, within Atu0764 at 759.817 kb on + strand, within Atu0764 at 759.825 kb on - strand, within Atu0764 at 759.832 kb on + strand, within Atu0764 at 759.840 kb on - strand, within Atu0764 at 759.938 kb on - strand, within Atu0764 at 759.998 kb on - strand at 760.003 kb on - strand at 760.063 kb on + strand at 760.098 kb on + strand at 760.101 kb on - strand at 760.105 kb on + strand at 760.132 kb on - strand at 760.174 kb on + strand at 760.180 kb on + strand at 760.182 kb on - strand at 760.182 kb on - strand at 760.214 kb on - strand at 760.218 kb on + strand at 760.226 kb on - strand at 760.396 kb on + strand, within Atu0765 at 760.404 kb on - strand, within Atu0765 at 760.416 kb on - strand, within Atu0765 at 760.564 kb on + strand, within Atu0765 at 760.639 kb on - strand, within Atu0765 at 760.682 kb on - strand, within Atu0765 at 760.709 kb on - strand, within Atu0765 at 760.926 kb on - strand, within Atu0765
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 758,700 + Atu0762 0.41 +0.1 758,726 - Atu0762 0.49 -0.3 758,831 - Atu0762 0.83 -1.2 758,885 + -0.2 759,109 + Atu0763 0.35 -0.9 759,154 + Atu0763 0.42 -0.1 759,188 + Atu0763 0.47 -0.1 759,240 + Atu0763 0.55 -0.0 759,248 + Atu0763 0.56 +0.2 759,248 - Atu0763 0.56 +0.4 759,249 + Atu0763 0.56 -1.3 759,278 + Atu0763 0.60 +0.1 759,281 - Atu0763 0.61 +0.8 759,582 + -0.3 759,605 - Atu0764 0.12 +0.3 759,681 + Atu0764 0.29 +0.7 759,807 + Atu0764 0.58 -0.3 759,817 + Atu0764 0.61 +0.4 759,825 - Atu0764 0.62 +0.0 759,832 + Atu0764 0.64 +0.0 759,840 - Atu0764 0.66 +0.6 759,938 - Atu0764 0.88 +0.6 759,998 - -0.4 760,003 - -0.3 760,063 + +0.3 760,098 + -0.9 760,101 - -0.1 760,105 + +0.6 760,132 - +0.5 760,174 + -0.4 760,180 + +0.3 760,182 - +0.0 760,182 - +2.0 760,214 - -0.3 760,218 + -0.1 760,226 - +0.2 760,396 + Atu0765 0.15 -1.6 760,404 - Atu0765 0.16 +0.2 760,416 - Atu0765 0.17 -1.1 760,564 + Atu0765 0.27 +0.8 760,639 - Atu0765 0.32 -0.5 760,682 - Atu0765 0.35 +0.0 760,709 - Atu0765 0.37 +0.3 760,926 - Atu0765 0.53 +0.4
Or see this region's nucleotide sequence