Experiment: KB with Benzalkonium chloride 1.55 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4917 and Psyr_RNA77 are separated by 758 nucleotides Psyr_RNA77 and Psyr_4918 are separated by 580 nucleotides
Psyr_4917: Psyr_4917 - Heat shock protein DnaJ, N-terminal, at 5,828,952 to 5,829,977
_4917
Psyr_RNA77: Psyr_RNA77 - tRNA-Thr, at 5,830,736 to 5,830,811
_RNA77
Psyr_4918: Psyr_4918 - hypothetical protein, at 5,831,392 to 5,831,862
_4918
Position (kb) 5830
5831 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5829.782 kb on - strand, within Psyr_4917 at 5829.782 kb on - strand, within Psyr_4917 at 5829.853 kb on + strand, within Psyr_4917 at 5829.956 kb on - strand at 5829.956 kb on - strand at 5830.014 kb on - strand at 5830.039 kb on + strand at 5830.119 kb on + strand at 5830.119 kb on + strand at 5830.119 kb on + strand at 5830.119 kb on + strand at 5830.119 kb on + strand at 5830.120 kb on - strand at 5830.120 kb on - strand at 5830.227 kb on - strand at 5830.227 kb on - strand at 5830.227 kb on - strand at 5830.267 kb on + strand at 5830.267 kb on + strand at 5830.267 kb on + strand at 5830.267 kb on + strand at 5830.267 kb on + strand at 5830.267 kb on + strand at 5830.267 kb on + strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.313 kb on + strand at 5830.313 kb on + strand at 5830.313 kb on + strand at 5830.314 kb on - strand at 5830.314 kb on - strand at 5830.322 kb on - strand at 5830.390 kb on + strand at 5830.390 kb on + strand at 5830.390 kb on + strand at 5830.390 kb on + strand at 5830.391 kb on - strand at 5830.532 kb on + strand at 5830.532 kb on + strand at 5830.532 kb on + strand at 5830.532 kb on + strand at 5830.532 kb on + strand at 5830.532 kb on + strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.582 kb on - strand at 5830.733 kb on + strand at 5830.813 kb on - strand at 5830.814 kb on + strand at 5830.815 kb on - strand at 5830.863 kb on + strand at 5830.863 kb on + strand at 5830.863 kb on + strand at 5830.864 kb on - strand at 5830.875 kb on + strand at 5830.875 kb on + strand at 5830.912 kb on - strand at 5831.030 kb on + strand at 5831.033 kb on + strand at 5831.068 kb on - strand at 5831.097 kb on + strand at 5831.098 kb on - strand at 5831.128 kb on + strand at 5831.131 kb on + strand at 5831.131 kb on + strand at 5831.131 kb on + strand at 5831.132 kb on - strand at 5831.137 kb on + strand at 5831.147 kb on - strand at 5831.149 kb on + strand at 5831.150 kb on - strand at 5831.150 kb on - strand at 5831.150 kb on - strand at 5831.150 kb on - strand at 5831.153 kb on + strand at 5831.153 kb on + strand at 5831.189 kb on + strand at 5831.201 kb on - strand at 5831.206 kb on + strand at 5831.206 kb on + strand at 5831.206 kb on + strand at 5831.206 kb on + strand at 5831.206 kb on + strand at 5831.206 kb on + strand at 5831.206 kb on + strand at 5831.206 kb on + strand at 5831.207 kb on - strand at 5831.207 kb on - strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.209 kb on - strand at 5831.209 kb on - strand at 5831.209 kb on - strand at 5831.209 kb on - strand at 5831.209 kb on - strand at 5831.209 kb on - strand at 5831.212 kb on + strand at 5831.213 kb on - strand at 5831.233 kb on + strand at 5831.233 kb on + strand at 5831.233 kb on + strand at 5831.233 kb on + strand at 5831.233 kb on + strand at 5831.234 kb on - strand at 5831.234 kb on - strand at 5831.234 kb on - strand at 5831.235 kb on + strand at 5831.236 kb on - strand at 5831.236 kb on - strand at 5831.236 kb on - strand at 5831.285 kb on + strand at 5831.286 kb on - strand at 5831.286 kb on - strand at 5831.289 kb on + strand at 5831.289 kb on + strand at 5831.289 kb on + strand at 5831.289 kb on + strand at 5831.290 kb on - strand at 5831.290 kb on - strand at 5831.293 kb on - strand at 5831.380 kb on + strand at 5831.405 kb on + strand at 5831.406 kb on - strand at 5831.406 kb on - strand at 5831.500 kb on + strand, within Psyr_4918 at 5831.500 kb on + strand, within Psyr_4918 at 5831.500 kb on + strand, within Psyr_4918 at 5831.500 kb on + strand, within Psyr_4918 at 5831.501 kb on - strand, within Psyr_4918 at 5831.501 kb on - strand, within Psyr_4918 at 5831.501 kb on - strand, within Psyr_4918 at 5831.644 kb on + strand, within Psyr_4918 at 5831.644 kb on + strand, within Psyr_4918 at 5831.644 kb on + strand, within Psyr_4918 at 5831.644 kb on + strand, within Psyr_4918 at 5831.645 kb on - strand, within Psyr_4918 at 5831.645 kb on - strand, within Psyr_4918 at 5831.645 kb on - strand, within Psyr_4918 at 5831.645 kb on - strand, within Psyr_4918 at 5831.645 kb on - strand, within Psyr_4918 at 5831.645 kb on - strand, within Psyr_4918 at 5831.645 kb on - strand, within Psyr_4918
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium chloride 1.55 ug/ml remove 5,829,782 - Psyr_4917 0.81 +0.2 5,829,782 - Psyr_4917 0.81 +0.0 5,829,853 + Psyr_4917 0.88 -0.4 5,829,956 - +0.3 5,829,956 - -0.1 5,830,014 - +0.3 5,830,039 + +0.5 5,830,119 + -1.6 5,830,119 + -0.2 5,830,119 + -0.3 5,830,119 + -0.4 5,830,119 + -0.2 5,830,120 - -0.2 5,830,120 - +0.1 5,830,227 - +2.8 5,830,227 - -0.5 5,830,227 - -1.6 5,830,267 + -0.5 5,830,267 + -0.6 5,830,267 + +0.1 5,830,267 + +0.1 5,830,267 + +1.4 5,830,267 + +1.9 5,830,267 + -1.3 5,830,268 - -0.8 5,830,268 - -1.1 5,830,268 - +1.4 5,830,268 - -2.2 5,830,268 - +0.5 5,830,268 - +0.4 5,830,268 - +0.6 5,830,268 - -0.6 5,830,268 - +0.0 5,830,268 - -1.2 5,830,313 + -0.8 5,830,313 + -0.0 5,830,313 + -1.3 5,830,314 - -0.6 5,830,314 - -0.3 5,830,322 - +0.8 5,830,390 + +1.3 5,830,390 + +0.9 5,830,390 + -0.3 5,830,390 + +0.5 5,830,391 - +0.5 5,830,532 + -1.0 5,830,532 + +0.0 5,830,532 + -0.9 5,830,532 + -1.4 5,830,532 + -1.3 5,830,532 + +0.3 5,830,533 - +0.4 5,830,533 - -0.2 5,830,533 - +1.2 5,830,533 - +0.4 5,830,533 - +1.3 5,830,533 - +0.1 5,830,533 - -0.6 5,830,533 - +0.7 5,830,533 - -2.2 5,830,582 - +0.2 5,830,733 + -0.7 5,830,813 - -0.8 5,830,814 + -0.2 5,830,815 - +0.3 5,830,863 + +1.5 5,830,863 + -1.5 5,830,863 + -0.1 5,830,864 - -0.6 5,830,875 + +0.3 5,830,875 + +0.2 5,830,912 - -0.2 5,831,030 + -0.1 5,831,033 + -0.0 5,831,068 - +0.3 5,831,097 + +1.3 5,831,098 - +0.3 5,831,128 + -1.5 5,831,131 + +0.1 5,831,131 + -0.4 5,831,131 + -1.2 5,831,132 - +1.1 5,831,137 + -0.8 5,831,147 - -3.2 5,831,149 + -0.7 5,831,150 - -1.3 5,831,150 - +0.1 5,831,150 - +0.2 5,831,150 - -0.2 5,831,153 + -0.4 5,831,153 + -0.7 5,831,189 + -1.2 5,831,201 - -1.1 5,831,206 + +0.7 5,831,206 + -0.0 5,831,206 + -0.8 5,831,206 + -0.7 5,831,206 + -1.9 5,831,206 + -0.3 5,831,206 + -0.4 5,831,206 + -0.6 5,831,207 - +0.9 5,831,207 - +0.5 5,831,208 + -2.2 5,831,208 + -0.3 5,831,208 + +0.6 5,831,208 + -0.3 5,831,208 + -0.1 5,831,208 + -0.3 5,831,208 + -1.8 5,831,208 + -1.1 5,831,208 + -0.6 5,831,208 + -2.0 5,831,209 - -2.0 5,831,209 - -0.6 5,831,209 - -0.1 5,831,209 - +0.3 5,831,209 - -1.0 5,831,209 - +0.4 5,831,212 + +0.1 5,831,213 - +0.8 5,831,233 + -1.2 5,831,233 + -2.6 5,831,233 + -1.5 5,831,233 + -0.4 5,831,233 + +0.1 5,831,234 - +0.2 5,831,234 - -0.5 5,831,234 - +0.4 5,831,235 + +0.5 5,831,236 - +0.1 5,831,236 - -0.5 5,831,236 - +0.2 5,831,285 + +0.9 5,831,286 - -1.1 5,831,286 - +0.2 5,831,289 + -0.6 5,831,289 + -1.2 5,831,289 + +0.4 5,831,289 + -0.0 5,831,290 - +0.1 5,831,290 - +0.7 5,831,293 - +0.6 5,831,380 + +0.2 5,831,405 + -0.3 5,831,406 - -1.3 5,831,406 - -0.1 5,831,500 + Psyr_4918 0.23 +0.3 5,831,500 + Psyr_4918 0.23 +1.3 5,831,500 + Psyr_4918 0.23 -0.4 5,831,500 + Psyr_4918 0.23 +1.8 5,831,501 - Psyr_4918 0.23 +0.1 5,831,501 - Psyr_4918 0.23 -2.2 5,831,501 - Psyr_4918 0.23 +1.2 5,831,644 + Psyr_4918 0.54 -0.6 5,831,644 + Psyr_4918 0.54 +0.6 5,831,644 + Psyr_4918 0.54 -1.2 5,831,644 + Psyr_4918 0.54 +0.1 5,831,645 - Psyr_4918 0.54 +0.8 5,831,645 - Psyr_4918 0.54 +0.1 5,831,645 - Psyr_4918 0.54 -0.1 5,831,645 - Psyr_4918 0.54 +0.2 5,831,645 - Psyr_4918 0.54 -1.0 5,831,645 - Psyr_4918 0.54 +0.5 5,831,645 - Psyr_4918 0.54 -1.7
Or see this region's nucleotide sequence