Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_RNA13

Experiment: KB with Benzalkonium chloride 1.55 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0851 and Psyr_RNA13 are separated by 500 nucleotidesPsyr_RNA13 and Psyr_RNA14 are separated by 123 nucleotidesPsyr_RNA14 and Psyr_RNA15 are separated by 30 nucleotidesPsyr_RNA15 and Psyr_RNA16 are separated by 243 nucleotides Psyr_0851: Psyr_0851 - Protein of unknown function UPF0191, at 963,553 to 964,185 _0851 Psyr_RNA13: Psyr_RNA13 - 16S ribosomal RNA, at 964,686 to 966,223 _RNA13 Psyr_RNA14: Psyr_RNA14 - tRNA-Ile, at 966,347 to 966,423 _RNA14 Psyr_RNA15: Psyr_RNA15 - tRNA-Ala, at 966,454 to 966,529 _RNA15 Psyr_RNA16: Psyr_RNA16 - 23S ribosomal RNA, at 966,773 to 969,675 _RNA16 Position (kb) 964 965 966 967Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 963.797 kb on - strand, within Psyr_0851at 963.820 kb on + strand, within Psyr_0851at 963.820 kb on + strand, within Psyr_0851at 963.820 kb on + strand, within Psyr_0851at 963.821 kb on - strand, within Psyr_0851at 963.821 kb on - strand, within Psyr_0851at 963.821 kb on - strand, within Psyr_0851at 963.821 kb on - strand, within Psyr_0851at 963.883 kb on + strand, within Psyr_0851at 963.883 kb on + strand, within Psyr_0851at 963.883 kb on + strand, within Psyr_0851at 963.883 kb on + strand, within Psyr_0851at 963.883 kb on + strand, within Psyr_0851at 963.883 kb on + strand, within Psyr_0851at 963.883 kb on + strand, within Psyr_0851at 963.883 kb on + strand, within Psyr_0851at 963.883 kb on + strand, within Psyr_0851at 963.884 kb on - strand, within Psyr_0851at 963.884 kb on - strand, within Psyr_0851at 963.884 kb on - strand, within Psyr_0851at 963.884 kb on - strand, within Psyr_0851at 963.884 kb on - strand, within Psyr_0851at 963.884 kb on - strand, within Psyr_0851at 963.885 kb on + strand, within Psyr_0851at 963.885 kb on + strand, within Psyr_0851at 963.885 kb on + strand, within Psyr_0851at 963.885 kb on + strand, within Psyr_0851at 963.885 kb on + strand, within Psyr_0851at 963.885 kb on + strand, within Psyr_0851at 963.885 kb on + strand, within Psyr_0851at 963.885 kb on + strand, within Psyr_0851at 963.885 kb on + strand, within Psyr_0851at 963.885 kb on + strand, within Psyr_0851at 963.886 kb on - strand, within Psyr_0851at 963.886 kb on - strand, within Psyr_0851at 963.886 kb on - strand, within Psyr_0851at 963.886 kb on - strand, within Psyr_0851at 963.886 kb on - strand, within Psyr_0851at 963.946 kb on + strand, within Psyr_0851at 963.946 kb on + strand, within Psyr_0851at 963.948 kb on + strand, within Psyr_0851at 963.949 kb on - strand, within Psyr_0851at 963.949 kb on - strand, within Psyr_0851at 963.987 kb on + strand, within Psyr_0851at 963.988 kb on - strand, within Psyr_0851at 963.997 kb on + strand, within Psyr_0851at 963.997 kb on + strand, within Psyr_0851at 963.997 kb on + strand, within Psyr_0851at 963.998 kb on - strand, within Psyr_0851at 963.998 kb on - strand, within Psyr_0851at 963.998 kb on - strand, within Psyr_0851at 964.001 kb on + strand, within Psyr_0851at 964.001 kb on + strand, within Psyr_0851at 964.002 kb on - strand, within Psyr_0851at 964.002 kb on - strand, within Psyr_0851at 964.026 kb on + strand, within Psyr_0851at 964.026 kb on + strand, within Psyr_0851at 964.026 kb on + strand, within Psyr_0851at 964.026 kb on + strand, within Psyr_0851at 964.026 kb on + strand, within Psyr_0851at 964.026 kb on + strand, within Psyr_0851at 964.026 kb on + strand, within Psyr_0851at 964.026 kb on + strand, within Psyr_0851at 964.026 kb on + strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.027 kb on - strand, within Psyr_0851at 964.054 kb on - strand, within Psyr_0851at 964.070 kb on - strand, within Psyr_0851at 964.079 kb on + strand, within Psyr_0851at 964.205 kb on - strandat 964.205 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium chloride 1.55 ug/ml
remove
963,797 - Psyr_0851 0.39 -0.2
963,820 + Psyr_0851 0.42 +0.5
963,820 + Psyr_0851 0.42 -0.6
963,820 + Psyr_0851 0.42 -0.6
963,821 - Psyr_0851 0.42 -1.2
963,821 - Psyr_0851 0.42 -0.1
963,821 - Psyr_0851 0.42 +1.3
963,821 - Psyr_0851 0.42 +0.8
963,883 + Psyr_0851 0.52 -0.3
963,883 + Psyr_0851 0.52 +0.8
963,883 + Psyr_0851 0.52 -3.1
963,883 + Psyr_0851 0.52 -0.3
963,883 + Psyr_0851 0.52 -1.6
963,883 + Psyr_0851 0.52 -1.1
963,883 + Psyr_0851 0.52 +0.7
963,883 + Psyr_0851 0.52 -2.2
963,883 + Psyr_0851 0.52 +0.2
963,884 - Psyr_0851 0.52 -0.6
963,884 - Psyr_0851 0.52 -1.1
963,884 - Psyr_0851 0.52 -1.9
963,884 - Psyr_0851 0.52 -0.5
963,884 - Psyr_0851 0.52 -1.2
963,884 - Psyr_0851 0.52 -1.3
963,885 + Psyr_0851 0.52 +0.0
963,885 + Psyr_0851 0.52 -0.3
963,885 + Psyr_0851 0.52 -1.4
963,885 + Psyr_0851 0.52 +0.1
963,885 + Psyr_0851 0.52 +1.8
963,885 + Psyr_0851 0.52 +0.8
963,885 + Psyr_0851 0.52 -0.8
963,885 + Psyr_0851 0.52 -0.6
963,885 + Psyr_0851 0.52 -0.0
963,885 + Psyr_0851 0.52 +1.1
963,886 - Psyr_0851 0.53 +1.7
963,886 - Psyr_0851 0.53 -0.5
963,886 - Psyr_0851 0.53 -0.4
963,886 - Psyr_0851 0.53 +0.3
963,886 - Psyr_0851 0.53 +1.8
963,946 + Psyr_0851 0.62 -0.4
963,946 + Psyr_0851 0.62 +0.4
963,948 + Psyr_0851 0.62 -0.4
963,949 - Psyr_0851 0.63 -0.2
963,949 - Psyr_0851 0.63 +0.2
963,987 + Psyr_0851 0.69 +0.5
963,988 - Psyr_0851 0.69 +0.6
963,997 + Psyr_0851 0.70 +0.6
963,997 + Psyr_0851 0.70 -0.7
963,997 + Psyr_0851 0.70 -2.2
963,998 - Psyr_0851 0.70 +0.3
963,998 - Psyr_0851 0.70 -2.4
963,998 - Psyr_0851 0.70 +0.6
964,001 + Psyr_0851 0.71 -0.0
964,001 + Psyr_0851 0.71 +1.5
964,002 - Psyr_0851 0.71 -0.1
964,002 - Psyr_0851 0.71 -0.7
964,026 + Psyr_0851 0.75 +1.3
964,026 + Psyr_0851 0.75 -0.0
964,026 + Psyr_0851 0.75 -0.6
964,026 + Psyr_0851 0.75 -0.9
964,026 + Psyr_0851 0.75 +0.1
964,026 + Psyr_0851 0.75 +1.3
964,026 + Psyr_0851 0.75 -0.1
964,026 + Psyr_0851 0.75 +2.6
964,026 + Psyr_0851 0.75 +0.3
964,027 - Psyr_0851 0.75 +0.4
964,027 - Psyr_0851 0.75 -0.2
964,027 - Psyr_0851 0.75 +0.5
964,027 - Psyr_0851 0.75 -1.3
964,027 - Psyr_0851 0.75 -1.0
964,027 - Psyr_0851 0.75 -0.4
964,027 - Psyr_0851 0.75 -0.3
964,027 - Psyr_0851 0.75 -1.3
964,027 - Psyr_0851 0.75 -1.2
964,027 - Psyr_0851 0.75 -0.2
964,027 - Psyr_0851 0.75 +0.1
964,027 - Psyr_0851 0.75 -0.8
964,027 - Psyr_0851 0.75 +0.3
964,027 - Psyr_0851 0.75 -1.3
964,027 - Psyr_0851 0.75 +0.3
964,027 - Psyr_0851 0.75 -0.3
964,054 - Psyr_0851 0.79 +0.1
964,070 - Psyr_0851 0.82 +0.4
964,079 + Psyr_0851 0.83 +0.6
964,205 - +0.4
964,205 - +0.1

Or see this region's nucleotide sequence