Experiment: KB with Benzalkonium chloride 1.55 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4264 and Psyr_4265 are separated by 382 nucleotides Psyr_4265 and Psyr_4266 are separated by 139 nucleotides
Psyr_4264: Psyr_4264 - ABC transporter, at 5,081,416 to 5,083,080
_4264
Psyr_4265: Psyr_4265 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 5,083,463 to 5,087,299
_4265
Psyr_4266: Psyr_4266 - transcriptional regulator, LuxR family, at 5,087,439 to 5,088,431
_4266
Position (kb) 5083
5084
5085
5086
5087
5088 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5082.949 kb on - strand at 5083.064 kb on + strand at 5083.064 kb on + strand at 5083.064 kb on + strand at 5083.064 kb on + strand at 5083.065 kb on - strand at 5083.070 kb on + strand at 5083.070 kb on + strand at 5083.070 kb on + strand at 5083.071 kb on - strand at 5083.071 kb on - strand at 5083.071 kb on - strand at 5083.071 kb on - strand at 5083.093 kb on + strand at 5083.093 kb on + strand at 5083.102 kb on + strand at 5083.103 kb on - strand at 5083.156 kb on + strand at 5083.156 kb on + strand at 5083.157 kb on - strand at 5083.201 kb on - strand at 5083.201 kb on - strand at 5083.201 kb on - strand at 5083.238 kb on + strand at 5083.238 kb on + strand at 5083.239 kb on - strand at 5083.239 kb on - strand at 5083.240 kb on + strand at 5083.240 kb on + strand at 5083.241 kb on - strand at 5083.241 kb on - strand at 5083.376 kb on + strand at 5083.413 kb on + strand at 5083.418 kb on + strand at 5083.418 kb on + strand at 5083.418 kb on + strand at 5083.418 kb on + strand at 5083.418 kb on + strand at 5083.419 kb on - strand at 5083.419 kb on - strand at 5083.419 kb on - strand at 5083.419 kb on - strand at 5083.419 kb on - strand at 5083.419 kb on - strand at 5083.419 kb on - strand at 5083.422 kb on + strand at 5083.422 kb on + strand at 5083.423 kb on - strand at 5083.423 kb on - strand at 5083.501 kb on + strand at 5083.646 kb on + strand at 5083.913 kb on + strand, within Psyr_4265 at 5083.913 kb on + strand, within Psyr_4265 at 5083.913 kb on + strand, within Psyr_4265 at 5083.913 kb on + strand, within Psyr_4265 at 5083.913 kb on + strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.916 kb on - strand, within Psyr_4265 at 5083.916 kb on - strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.945 kb on + strand, within Psyr_4265 at 5083.945 kb on + strand, within Psyr_4265 at 5083.945 kb on + strand, within Psyr_4265 at 5083.945 kb on + strand, within Psyr_4265 at 5083.945 kb on + strand, within Psyr_4265 at 5083.945 kb on + strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.947 kb on + strand, within Psyr_4265 at 5083.947 kb on + strand, within Psyr_4265 at 5083.948 kb on - strand, within Psyr_4265 at 5083.948 kb on - strand, within Psyr_4265 at 5083.948 kb on - strand, within Psyr_4265 at 5083.982 kb on + strand, within Psyr_4265 at 5084.201 kb on + strand, within Psyr_4265 at 5084.201 kb on + strand, within Psyr_4265 at 5084.201 kb on + strand, within Psyr_4265 at 5084.201 kb on + strand, within Psyr_4265 at 5084.201 kb on + strand, within Psyr_4265 at 5084.202 kb on - strand, within Psyr_4265 at 5084.202 kb on - strand, within Psyr_4265 at 5084.202 kb on - strand, within Psyr_4265 at 5084.202 kb on - strand, within Psyr_4265 at 5084.762 kb on - strand, within Psyr_4265 at 5084.774 kb on - strand, within Psyr_4265 at 5084.849 kb on + strand, within Psyr_4265 at 5084.849 kb on + strand, within Psyr_4265 at 5084.849 kb on + strand, within Psyr_4265 at 5084.849 kb on + strand, within Psyr_4265 at 5084.849 kb on + strand, within Psyr_4265 at 5084.850 kb on - strand, within Psyr_4265 at 5084.850 kb on - strand, within Psyr_4265 at 5084.850 kb on - strand, within Psyr_4265 at 5084.850 kb on - strand, within Psyr_4265 at 5084.882 kb on + strand, within Psyr_4265 at 5084.882 kb on + strand, within Psyr_4265 at 5084.882 kb on + strand, within Psyr_4265 at 5084.882 kb on + strand, within Psyr_4265 at 5084.883 kb on - strand, within Psyr_4265 at 5084.883 kb on - strand, within Psyr_4265 at 5084.883 kb on - strand, within Psyr_4265 at 5084.883 kb on - strand, within Psyr_4265 at 5084.883 kb on - strand, within Psyr_4265 at 5084.883 kb on - strand, within Psyr_4265 at 5084.916 kb on - strand, within Psyr_4265 at 5084.990 kb on + strand, within Psyr_4265 at 5084.991 kb on - strand, within Psyr_4265 at 5085.037 kb on - strand, within Psyr_4265 at 5085.278 kb on + strand, within Psyr_4265 at 5085.278 kb on + strand, within Psyr_4265 at 5085.278 kb on + strand, within Psyr_4265 at 5085.278 kb on + strand, within Psyr_4265 at 5085.278 kb on + strand, within Psyr_4265 at 5085.278 kb on + strand, within Psyr_4265 at 5085.278 kb on + strand, within Psyr_4265 at 5085.278 kb on + strand, within Psyr_4265 at 5085.278 kb on + strand, within Psyr_4265 at 5085.278 kb on + strand, within Psyr_4265 at 5085.278 kb on + strand, within Psyr_4265 at 5085.279 kb on - strand, within Psyr_4265 at 5085.279 kb on - strand, within Psyr_4265 at 5085.279 kb on - strand, within Psyr_4265 at 5085.279 kb on - strand, within Psyr_4265 at 5085.279 kb on - strand, within Psyr_4265 at 5085.330 kb on + strand, within Psyr_4265 at 5085.330 kb on + strand, within Psyr_4265 at 5085.331 kb on - strand, within Psyr_4265 at 5085.331 kb on - strand, within Psyr_4265 at 5085.331 kb on - strand, within Psyr_4265 at 5085.372 kb on + strand, within Psyr_4265 at 5085.372 kb on + strand, within Psyr_4265 at 5085.372 kb on + strand, within Psyr_4265 at 5085.630 kb on + strand, within Psyr_4265 at 5085.677 kb on + strand, within Psyr_4265 at 5085.680 kb on - strand, within Psyr_4265 at 5085.926 kb on + strand, within Psyr_4265 at 5085.926 kb on + strand, within Psyr_4265 at 5085.926 kb on + strand, within Psyr_4265 at 5085.926 kb on + strand, within Psyr_4265 at 5085.926 kb on + strand, within Psyr_4265 at 5085.926 kb on + strand, within Psyr_4265 at 5085.927 kb on - strand, within Psyr_4265 at 5085.927 kb on - strand, within Psyr_4265 at 5085.927 kb on - strand, within Psyr_4265 at 5085.927 kb on - strand, within Psyr_4265 at 5085.927 kb on - strand, within Psyr_4265 at 5085.927 kb on - strand, within Psyr_4265 at 5085.993 kb on - strand, within Psyr_4265 at 5085.993 kb on - strand, within Psyr_4265 at 5085.995 kb on + strand, within Psyr_4265 at 5086.445 kb on + strand, within Psyr_4265 at 5086.445 kb on + strand, within Psyr_4265 at 5086.445 kb on + strand, within Psyr_4265 at 5086.445 kb on + strand, within Psyr_4265 at 5086.445 kb on + strand, within Psyr_4265 at 5086.445 kb on + strand, within Psyr_4265 at 5086.445 kb on + strand, within Psyr_4265 at 5086.445 kb on + strand, within Psyr_4265 at 5086.446 kb on - strand, within Psyr_4265 at 5086.446 kb on - strand, within Psyr_4265 at 5086.446 kb on - strand, within Psyr_4265 at 5086.484 kb on + strand, within Psyr_4265 at 5086.484 kb on + strand, within Psyr_4265 at 5086.484 kb on + strand, within Psyr_4265 at 5086.484 kb on + strand, within Psyr_4265 at 5086.484 kb on + strand, within Psyr_4265 at 5086.485 kb on - strand, within Psyr_4265 at 5086.485 kb on - strand, within Psyr_4265 at 5086.485 kb on - strand, within Psyr_4265 at 5086.577 kb on + strand, within Psyr_4265 at 5086.578 kb on - strand, within Psyr_4265 at 5086.578 kb on - strand, within Psyr_4265 at 5086.837 kb on + strand, within Psyr_4265 at 5086.854 kb on + strand, within Psyr_4265 at 5086.854 kb on + strand, within Psyr_4265 at 5086.854 kb on + strand, within Psyr_4265 at 5086.855 kb on - strand, within Psyr_4265 at 5086.945 kb on - strand at 5086.975 kb on + strand at 5087.018 kb on + strand at 5087.019 kb on - strand at 5087.019 kb on - strand at 5087.019 kb on - strand at 5087.163 kb on + strand at 5087.222 kb on + strand at 5087.222 kb on + strand at 5087.223 kb on - strand at 5087.356 kb on + strand at 5087.356 kb on + strand at 5087.356 kb on + strand at 5087.356 kb on + strand at 5087.356 kb on + strand at 5087.357 kb on - strand at 5087.357 kb on - strand at 5087.357 kb on - strand at 5087.357 kb on - strand at 5087.362 kb on + strand at 5087.362 kb on + strand at 5087.362 kb on + strand at 5087.363 kb on - strand at 5087.363 kb on - strand at 5087.450 kb on + strand at 5087.450 kb on + strand at 5087.451 kb on - strand at 5087.451 kb on - strand at 5087.541 kb on - strand, within Psyr_4266 at 5087.541 kb on - strand, within Psyr_4266 at 5087.814 kb on + strand, within Psyr_4266 at 5087.840 kb on - strand, within Psyr_4266 at 5087.979 kb on + strand, within Psyr_4266 at 5087.979 kb on + strand, within Psyr_4266 at 5087.979 kb on + strand, within Psyr_4266 at 5087.980 kb on - strand, within Psyr_4266 at 5088.021 kb on + strand, within Psyr_4266 at 5088.163 kb on - strand, within Psyr_4266 at 5088.214 kb on + strand, within Psyr_4266 at 5088.215 kb on - strand, within Psyr_4266 at 5088.215 kb on - strand, within Psyr_4266
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium chloride 1.55 ug/ml remove 5,082,949 - -0.2 5,083,064 + -1.2 5,083,064 + -1.1 5,083,064 + -2.1 5,083,064 + +0.5 5,083,065 - -1.2 5,083,070 + -2.3 5,083,070 + +0.5 5,083,070 + -1.4 5,083,071 - +0.3 5,083,071 - -1.2 5,083,071 - -2.1 5,083,071 - -0.0 5,083,093 + -0.8 5,083,093 + -1.6 5,083,102 + -0.9 5,083,103 - +1.6 5,083,156 + -0.8 5,083,156 + +1.2 5,083,157 - -1.3 5,083,201 - -0.4 5,083,201 - +0.8 5,083,201 - -0.9 5,083,238 + -1.0 5,083,238 + -0.6 5,083,239 - -2.2 5,083,239 - +0.8 5,083,240 + -0.4 5,083,240 + +1.5 5,083,241 - +0.4 5,083,241 - -0.8 5,083,376 + -1.2 5,083,413 + +0.5 5,083,418 + -0.9 5,083,418 + +0.5 5,083,418 + +0.3 5,083,418 + -1.9 5,083,418 + +0.4 5,083,419 - -0.3 5,083,419 - +0.8 5,083,419 - -0.9 5,083,419 - -2.1 5,083,419 - +0.9 5,083,419 - +1.0 5,083,419 - -1.0 5,083,422 + +0.7 5,083,422 + +1.0 5,083,423 - +0.8 5,083,423 - -0.5 5,083,501 + -1.1 5,083,646 + +0.4 5,083,913 + Psyr_4265 0.12 -0.2 5,083,913 + Psyr_4265 0.12 +0.3 5,083,913 + Psyr_4265 0.12 -0.7 5,083,913 + Psyr_4265 0.12 +1.3 5,083,913 + Psyr_4265 0.12 -0.6 5,083,914 - Psyr_4265 0.12 +1.1 5,083,914 - Psyr_4265 0.12 +0.6 5,083,914 - Psyr_4265 0.12 -0.2 5,083,914 - Psyr_4265 0.12 -0.2 5,083,914 - Psyr_4265 0.12 -0.2 5,083,914 - Psyr_4265 0.12 +1.3 5,083,914 - Psyr_4265 0.12 +1.0 5,083,916 - Psyr_4265 0.12 +2.1 5,083,916 - Psyr_4265 0.12 -1.1 5,083,943 + Psyr_4265 0.13 +0.1 5,083,943 + Psyr_4265 0.13 +0.1 5,083,943 + Psyr_4265 0.13 +0.3 5,083,943 + Psyr_4265 0.13 +0.2 5,083,943 + Psyr_4265 0.13 -0.3 5,083,943 + Psyr_4265 0.13 -0.4 5,083,943 + Psyr_4265 0.13 -0.5 5,083,944 - Psyr_4265 0.13 +0.6 5,083,944 - Psyr_4265 0.13 -0.3 5,083,944 - Psyr_4265 0.13 -0.2 5,083,944 - Psyr_4265 0.13 +1.0 5,083,944 - Psyr_4265 0.13 -1.6 5,083,944 - Psyr_4265 0.13 +0.7 5,083,944 - Psyr_4265 0.13 +0.4 5,083,945 + Psyr_4265 0.13 -1.2 5,083,945 + Psyr_4265 0.13 -1.2 5,083,945 + Psyr_4265 0.13 -0.7 5,083,945 + Psyr_4265 0.13 -0.3 5,083,945 + Psyr_4265 0.13 -0.0 5,083,945 + Psyr_4265 0.13 +0.1 5,083,946 - Psyr_4265 0.13 +1.0 5,083,946 - Psyr_4265 0.13 +0.8 5,083,946 - Psyr_4265 0.13 +1.1 5,083,946 - Psyr_4265 0.13 +0.2 5,083,946 - Psyr_4265 0.13 +1.6 5,083,947 + Psyr_4265 0.13 -0.1 5,083,947 + Psyr_4265 0.13 +0.4 5,083,948 - Psyr_4265 0.13 +0.9 5,083,948 - Psyr_4265 0.13 -0.2 5,083,948 - Psyr_4265 0.13 +0.2 5,083,982 + Psyr_4265 0.14 +1.8 5,084,201 + Psyr_4265 0.19 -1.6 5,084,201 + Psyr_4265 0.19 +3.2 5,084,201 + Psyr_4265 0.19 -1.5 5,084,201 + Psyr_4265 0.19 +0.1 5,084,201 + Psyr_4265 0.19 +1.8 5,084,202 - Psyr_4265 0.19 -1.2 5,084,202 - Psyr_4265 0.19 +1.9 5,084,202 - Psyr_4265 0.19 +1.0 5,084,202 - Psyr_4265 0.19 +0.2 5,084,762 - Psyr_4265 0.34 +0.8 5,084,774 - Psyr_4265 0.34 +0.4 5,084,849 + Psyr_4265 0.36 +0.3 5,084,849 + Psyr_4265 0.36 -0.7 5,084,849 + Psyr_4265 0.36 -0.4 5,084,849 + Psyr_4265 0.36 +0.7 5,084,849 + Psyr_4265 0.36 -1.0 5,084,850 - Psyr_4265 0.36 +0.5 5,084,850 - Psyr_4265 0.36 -0.6 5,084,850 - Psyr_4265 0.36 +0.0 5,084,850 - Psyr_4265 0.36 +0.3 5,084,882 + Psyr_4265 0.37 -0.4 5,084,882 + Psyr_4265 0.37 -0.8 5,084,882 + Psyr_4265 0.37 -1.1 5,084,882 + Psyr_4265 0.37 +0.1 5,084,883 - Psyr_4265 0.37 +1.0 5,084,883 - Psyr_4265 0.37 -0.2 5,084,883 - Psyr_4265 0.37 -0.6 5,084,883 - Psyr_4265 0.37 -0.4 5,084,883 - Psyr_4265 0.37 +1.8 5,084,883 - Psyr_4265 0.37 -0.6 5,084,916 - Psyr_4265 0.38 +0.3 5,084,990 + Psyr_4265 0.40 +0.8 5,084,991 - Psyr_4265 0.40 -0.6 5,085,037 - Psyr_4265 0.41 +1.1 5,085,278 + Psyr_4265 0.47 +1.1 5,085,278 + Psyr_4265 0.47 +0.4 5,085,278 + Psyr_4265 0.47 +0.8 5,085,278 + Psyr_4265 0.47 -0.4 5,085,278 + Psyr_4265 0.47 +1.3 5,085,278 + Psyr_4265 0.47 +1.0 5,085,278 + Psyr_4265 0.47 +0.0 5,085,278 + Psyr_4265 0.47 +0.1 5,085,278 + Psyr_4265 0.47 +1.8 5,085,278 + Psyr_4265 0.47 -0.8 5,085,278 + Psyr_4265 0.47 -0.2 5,085,279 - Psyr_4265 0.47 +0.3 5,085,279 - Psyr_4265 0.47 +1.3 5,085,279 - Psyr_4265 0.47 -0.3 5,085,279 - Psyr_4265 0.47 -0.5 5,085,279 - Psyr_4265 0.47 +1.0 5,085,330 + Psyr_4265 0.49 +0.5 5,085,330 + Psyr_4265 0.49 +0.3 5,085,331 - Psyr_4265 0.49 -0.7 5,085,331 - Psyr_4265 0.49 -1.3 5,085,331 - Psyr_4265 0.49 +0.5 5,085,372 + Psyr_4265 0.50 -1.6 5,085,372 + Psyr_4265 0.50 +0.8 5,085,372 + Psyr_4265 0.50 +0.8 5,085,630 + Psyr_4265 0.56 +1.0 5,085,677 + Psyr_4265 0.58 +0.1 5,085,680 - Psyr_4265 0.58 -0.1 5,085,926 + Psyr_4265 0.64 +0.1 5,085,926 + Psyr_4265 0.64 +1.0 5,085,926 + Psyr_4265 0.64 +0.1 5,085,926 + Psyr_4265 0.64 +3.3 5,085,926 + Psyr_4265 0.64 -1.0 5,085,926 + Psyr_4265 0.64 -1.0 5,085,927 - Psyr_4265 0.64 +0.9 5,085,927 - Psyr_4265 0.64 +1.2 5,085,927 - Psyr_4265 0.64 -0.1 5,085,927 - Psyr_4265 0.64 -2.2 5,085,927 - Psyr_4265 0.64 -0.4 5,085,927 - Psyr_4265 0.64 +0.0 5,085,993 - Psyr_4265 0.66 +0.5 5,085,993 - Psyr_4265 0.66 -0.8 5,085,995 + Psyr_4265 0.66 -0.5 5,086,445 + Psyr_4265 0.78 -1.3 5,086,445 + Psyr_4265 0.78 -1.2 5,086,445 + Psyr_4265 0.78 -1.7 5,086,445 + Psyr_4265 0.78 +0.5 5,086,445 + Psyr_4265 0.78 +0.3 5,086,445 + Psyr_4265 0.78 -0.7 5,086,445 + Psyr_4265 0.78 +3.7 5,086,445 + Psyr_4265 0.78 -2.3 5,086,446 - Psyr_4265 0.78 +0.1 5,086,446 - Psyr_4265 0.78 -0.6 5,086,446 - Psyr_4265 0.78 -0.6 5,086,484 + Psyr_4265 0.79 -2.5 5,086,484 + Psyr_4265 0.79 -0.7 5,086,484 + Psyr_4265 0.79 -0.3 5,086,484 + Psyr_4265 0.79 +0.3 5,086,484 + Psyr_4265 0.79 -0.0 5,086,485 - Psyr_4265 0.79 -0.3 5,086,485 - Psyr_4265 0.79 +1.3 5,086,485 - Psyr_4265 0.79 -0.0 5,086,577 + Psyr_4265 0.81 +1.5 5,086,578 - Psyr_4265 0.81 +0.3 5,086,578 - Psyr_4265 0.81 +0.4 5,086,837 + Psyr_4265 0.88 -0.4 5,086,854 + Psyr_4265 0.88 +2.9 5,086,854 + Psyr_4265 0.88 -0.3 5,086,854 + Psyr_4265 0.88 +0.4 5,086,855 - Psyr_4265 0.88 -0.2 5,086,945 - +1.2 5,086,975 + -0.3 5,087,018 + +0.5 5,087,019 - +1.4 5,087,019 - -0.1 5,087,019 - +1.5 5,087,163 + +0.2 5,087,222 + +0.7 5,087,222 + +1.2 5,087,223 - +0.8 5,087,356 + -0.5 5,087,356 + -0.3 5,087,356 + -0.3 5,087,356 + +0.6 5,087,356 + -0.3 5,087,357 - -0.2 5,087,357 - -2.6 5,087,357 - -0.6 5,087,357 - +0.9 5,087,362 + -0.0 5,087,362 + +0.4 5,087,362 + +1.4 5,087,363 - +0.5 5,087,363 - +1.9 5,087,450 + +0.0 5,087,450 + -0.4 5,087,451 - +0.5 5,087,451 - -0.6 5,087,541 - Psyr_4266 0.10 +1.2 5,087,541 - Psyr_4266 0.10 -0.6 5,087,814 + Psyr_4266 0.38 +1.0 5,087,840 - Psyr_4266 0.40 -0.0 5,087,979 + Psyr_4266 0.54 -0.2 5,087,979 + Psyr_4266 0.54 -0.4 5,087,979 + Psyr_4266 0.54 +0.7 5,087,980 - Psyr_4266 0.54 -1.8 5,088,021 + Psyr_4266 0.59 +1.3 5,088,163 - Psyr_4266 0.73 -1.9 5,088,214 + Psyr_4266 0.78 +0.9 5,088,215 - Psyr_4266 0.78 +0.2 5,088,215 - Psyr_4266 0.78 -1.2
Or see this region's nucleotide sequence