Experiment: KB with Benzalkonium chloride 1.55 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4007 and Psyr_4008 are separated by 3 nucleotides Psyr_4008 and Psyr_4009 overlap by 4 nucleotides
Psyr_4007: Psyr_4007 - Secretion protein HlyD, at 4,771,083 to 4,772,243
_4007
Psyr_4008: Psyr_4008 - Hydrophobe/amphiphile efflux-1 HAE1, at 4,772,247 to 4,775,381
_4008
Psyr_4009: Psyr_4009 - RND efflux system, outer membrane lipoprotein, NodT, at 4,775,378 to 4,776,838
_4009
Position (kb) 4772
4773
4774
4775
4776 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4771.357 kb on - strand, within Psyr_4007 at 4771.377 kb on + strand, within Psyr_4007 at 4771.378 kb on - strand, within Psyr_4007 at 4771.378 kb on - strand, within Psyr_4007 at 4771.378 kb on - strand, within Psyr_4007 at 4771.440 kb on + strand, within Psyr_4007 at 4771.440 kb on + strand, within Psyr_4007 at 4771.440 kb on + strand, within Psyr_4007 at 4771.483 kb on - strand, within Psyr_4007 at 4771.551 kb on + strand, within Psyr_4007 at 4771.571 kb on + strand, within Psyr_4007 at 4771.571 kb on + strand, within Psyr_4007 at 4771.572 kb on - strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.672 kb on - strand, within Psyr_4007 at 4771.672 kb on - strand, within Psyr_4007 at 4771.672 kb on - strand, within Psyr_4007 at 4771.672 kb on - strand, within Psyr_4007 at 4771.672 kb on - strand, within Psyr_4007 at 4771.672 kb on - strand, within Psyr_4007 at 4771.672 kb on - strand, within Psyr_4007 at 4771.672 kb on - strand, within Psyr_4007 at 4772.133 kb on + strand at 4772.133 kb on + strand at 4772.133 kb on + strand at 4772.134 kb on - strand at 4772.134 kb on - strand at 4772.134 kb on - strand at 4772.242 kb on - strand at 4772.242 kb on - strand at 4772.242 kb on - strand at 4772.242 kb on - strand at 4772.242 kb on - strand at 4775.448 kb on - strand at 4775.448 kb on - strand at 4775.448 kb on - strand at 4775.643 kb on - strand, within Psyr_4009 at 4775.852 kb on + strand, within Psyr_4009 at 4775.852 kb on + strand, within Psyr_4009 at 4775.852 kb on + strand, within Psyr_4009 at 4775.853 kb on - strand, within Psyr_4009 at 4775.853 kb on - strand, within Psyr_4009 at 4775.853 kb on - strand, within Psyr_4009 at 4775.853 kb on - strand, within Psyr_4009 at 4775.853 kb on - strand, within Psyr_4009 at 4775.918 kb on + strand, within Psyr_4009 at 4775.918 kb on + strand, within Psyr_4009 at 4775.918 kb on + strand, within Psyr_4009 at 4775.918 kb on + strand, within Psyr_4009 at 4775.918 kb on + strand, within Psyr_4009 at 4775.918 kb on + strand, within Psyr_4009 at 4775.919 kb on - strand, within Psyr_4009 at 4775.919 kb on - strand, within Psyr_4009 at 4775.919 kb on - strand, within Psyr_4009 at 4775.919 kb on - strand, within Psyr_4009 at 4775.919 kb on - strand, within Psyr_4009 at 4775.979 kb on - strand, within Psyr_4009 at 4775.979 kb on - strand, within Psyr_4009 at 4776.092 kb on + strand, within Psyr_4009 at 4776.093 kb on - strand, within Psyr_4009
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium chloride 1.55 ug/ml remove 4,771,357 - Psyr_4007 0.24 -0.5 4,771,377 + Psyr_4007 0.25 -0.4 4,771,378 - Psyr_4007 0.25 -0.4 4,771,378 - Psyr_4007 0.25 -0.1 4,771,378 - Psyr_4007 0.25 +0.5 4,771,440 + Psyr_4007 0.31 +1.3 4,771,440 + Psyr_4007 0.31 -1.5 4,771,440 + Psyr_4007 0.31 -0.9 4,771,483 - Psyr_4007 0.34 -1.5 4,771,551 + Psyr_4007 0.40 -1.1 4,771,571 + Psyr_4007 0.42 +0.4 4,771,571 + Psyr_4007 0.42 +0.8 4,771,572 - Psyr_4007 0.42 -2.4 4,771,671 + Psyr_4007 0.51 +0.8 4,771,671 + Psyr_4007 0.51 +0.5 4,771,671 + Psyr_4007 0.51 +0.0 4,771,671 + Psyr_4007 0.51 -0.1 4,771,671 + Psyr_4007 0.51 +0.5 4,771,672 - Psyr_4007 0.51 -2.8 4,771,672 - Psyr_4007 0.51 -0.6 4,771,672 - Psyr_4007 0.51 -0.6 4,771,672 - Psyr_4007 0.51 -0.1 4,771,672 - Psyr_4007 0.51 -0.1 4,771,672 - Psyr_4007 0.51 +0.4 4,771,672 - Psyr_4007 0.51 -0.2 4,771,672 - Psyr_4007 0.51 +0.6 4,772,133 + +2.0 4,772,133 + -0.9 4,772,133 + +2.1 4,772,134 - -2.0 4,772,134 - -2.0 4,772,134 - -0.5 4,772,242 - -0.7 4,772,242 - -1.5 4,772,242 - +1.6 4,772,242 - -0.5 4,772,242 - -1.5 4,775,448 - -0.9 4,775,448 - +0.8 4,775,448 - +0.5 4,775,643 - Psyr_4009 0.18 -0.1 4,775,852 + Psyr_4009 0.32 +1.1 4,775,852 + Psyr_4009 0.32 -2.4 4,775,852 + Psyr_4009 0.32 -0.0 4,775,853 - Psyr_4009 0.33 +1.1 4,775,853 - Psyr_4009 0.33 -0.1 4,775,853 - Psyr_4009 0.33 -0.3 4,775,853 - Psyr_4009 0.33 +0.5 4,775,853 - Psyr_4009 0.33 +0.3 4,775,918 + Psyr_4009 0.37 +0.4 4,775,918 + Psyr_4009 0.37 +1.4 4,775,918 + Psyr_4009 0.37 +0.7 4,775,918 + Psyr_4009 0.37 +0.4 4,775,918 + Psyr_4009 0.37 +0.2 4,775,918 + Psyr_4009 0.37 -0.4 4,775,919 - Psyr_4009 0.37 +0.3 4,775,919 - Psyr_4009 0.37 -0.2 4,775,919 - Psyr_4009 0.37 -0.5 4,775,919 - Psyr_4009 0.37 +0.3 4,775,919 - Psyr_4009 0.37 -1.0 4,775,979 - Psyr_4009 0.41 +1.8 4,775,979 - Psyr_4009 0.41 -0.3 4,776,092 + Psyr_4009 0.49 +1.0 4,776,093 - Psyr_4009 0.49 +0.3
Or see this region's nucleotide sequence