Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3011

Experiment: KB with Benzalkonium chloride 1.55 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3009 and Psyr_3010 overlap by 4 nucleotidesPsyr_3010 and Psyr_3011 overlap by 24 nucleotidesPsyr_3011 and Psyr_3012 are separated by 317 nucleotidesPsyr_3012 and Psyr_3013 are separated by 157 nucleotides Psyr_3009: Psyr_3009 - Nicotinamide mononucleotide transporter PnuC, at 3,603,690 to 3,604,253 _3009 Psyr_3010: Psyr_3010 - nicotinamide-nucleotide adenylyltransferase, putative, at 3,604,250 to 3,604,795 _3010 Psyr_3011: Psyr_3011 - Helix-turn-helix, Fis-type, at 3,604,772 to 3,606,097 _3011 Psyr_3012: Psyr_3012 - conserved hypothetical protein, at 3,606,415 to 3,606,681 _3012 Psyr_3013: Psyr_3013 - magnesium chelatase subunit ChlD, at 3,606,839 to 3,607,426 _3013 Position (kb) 3604 3605 3606 3607Strain fitness (log2 ratio) -2 -1 0 1 2at 3603.798 kb on + strand, within Psyr_3009at 3603.798 kb on + strand, within Psyr_3009at 3603.799 kb on - strand, within Psyr_3009at 3603.799 kb on - strand, within Psyr_3009at 3603.799 kb on - strand, within Psyr_3009at 3603.799 kb on - strand, within Psyr_3009at 3603.799 kb on - strand, within Psyr_3009at 3603.799 kb on - strand, within Psyr_3009at 3603.799 kb on - strand, within Psyr_3009at 3603.809 kb on - strand, within Psyr_3009at 3603.873 kb on + strand, within Psyr_3009at 3603.873 kb on + strand, within Psyr_3009at 3603.873 kb on + strand, within Psyr_3009at 3603.874 kb on - strand, within Psyr_3009at 3603.874 kb on - strand, within Psyr_3009at 3604.152 kb on + strand, within Psyr_3009at 3604.152 kb on + strand, within Psyr_3009at 3604.152 kb on + strand, within Psyr_3009at 3604.153 kb on - strand, within Psyr_3009at 3604.153 kb on - strand, within Psyr_3009at 3604.164 kb on + strand, within Psyr_3009at 3604.165 kb on - strand, within Psyr_3009at 3604.165 kb on - strand, within Psyr_3009at 3604.165 kb on - strand, within Psyr_3009at 3604.182 kb on + strand, within Psyr_3009at 3604.183 kb on - strand, within Psyr_3009at 3604.311 kb on + strand, within Psyr_3010at 3604.311 kb on + strand, within Psyr_3010at 3604.312 kb on - strand, within Psyr_3010at 3604.312 kb on - strand, within Psyr_3010at 3604.318 kb on + strand, within Psyr_3010at 3604.318 kb on + strand, within Psyr_3010at 3604.318 kb on + strand, within Psyr_3010at 3604.319 kb on - strand, within Psyr_3010at 3604.319 kb on - strand, within Psyr_3010at 3604.319 kb on - strand, within Psyr_3010at 3604.319 kb on - strand, within Psyr_3010at 3604.319 kb on - strand, within Psyr_3010at 3604.319 kb on - strand, within Psyr_3010at 3604.319 kb on - strand, within Psyr_3010at 3604.346 kb on + strand, within Psyr_3010at 3604.398 kb on + strand, within Psyr_3010at 3604.562 kb on + strand, within Psyr_3010at 3604.803 kb on + strandat 3604.908 kb on + strand, within Psyr_3011at 3604.908 kb on + strand, within Psyr_3011at 3604.909 kb on - strand, within Psyr_3011at 3605.118 kb on + strand, within Psyr_3011at 3605.118 kb on + strand, within Psyr_3011at 3605.118 kb on + strand, within Psyr_3011at 3605.119 kb on - strand, within Psyr_3011at 3605.119 kb on - strand, within Psyr_3011at 3605.195 kb on + strand, within Psyr_3011at 3605.195 kb on + strand, within Psyr_3011at 3605.195 kb on + strand, within Psyr_3011at 3605.196 kb on - strand, within Psyr_3011at 3605.196 kb on - strand, within Psyr_3011at 3605.196 kb on - strand, within Psyr_3011at 3605.196 kb on - strand, within Psyr_3011at 3605.196 kb on - strand, within Psyr_3011at 3605.196 kb on - strand, within Psyr_3011at 3605.196 kb on - strand, within Psyr_3011at 3605.196 kb on - strand, within Psyr_3011at 3605.196 kb on - strand, within Psyr_3011at 3605.196 kb on - strand, within Psyr_3011at 3605.209 kb on - strand, within Psyr_3011at 3605.209 kb on - strand, within Psyr_3011at 3605.211 kb on + strand, within Psyr_3011at 3605.211 kb on + strand, within Psyr_3011at 3605.212 kb on - strand, within Psyr_3011at 3605.557 kb on + strand, within Psyr_3011at 3605.557 kb on + strand, within Psyr_3011at 3605.558 kb on - strand, within Psyr_3011at 3605.954 kb on + strand, within Psyr_3011at 3605.954 kb on + strand, within Psyr_3011at 3605.955 kb on - strand, within Psyr_3011at 3605.955 kb on - strand, within Psyr_3011at 3605.955 kb on - strand, within Psyr_3011at 3606.121 kb on - strandat 3606.147 kb on + strandat 3606.148 kb on - strandat 3606.188 kb on - strandat 3606.299 kb on + strandat 3606.352 kb on - strandat 3606.352 kb on - strandat 3606.393 kb on - strandat 3606.393 kb on - strandat 3606.583 kb on + strand, within Psyr_3012

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium chloride 1.55 ug/ml
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3,603,798 + Psyr_3009 0.19 +0.2
3,603,798 + Psyr_3009 0.19 +0.2
3,603,799 - Psyr_3009 0.19 +0.5
3,603,799 - Psyr_3009 0.19 -0.2
3,603,799 - Psyr_3009 0.19 +0.7
3,603,799 - Psyr_3009 0.19 -0.8
3,603,799 - Psyr_3009 0.19 +0.7
3,603,799 - Psyr_3009 0.19 -1.3
3,603,799 - Psyr_3009 0.19 +0.3
3,603,809 - Psyr_3009 0.21 -0.4
3,603,873 + Psyr_3009 0.32 -0.8
3,603,873 + Psyr_3009 0.32 +0.8
3,603,873 + Psyr_3009 0.32 +0.1
3,603,874 - Psyr_3009 0.33 -0.3
3,603,874 - Psyr_3009 0.33 -2.5
3,604,152 + Psyr_3009 0.82 -0.8
3,604,152 + Psyr_3009 0.82 -0.3
3,604,152 + Psyr_3009 0.82 +0.3
3,604,153 - Psyr_3009 0.82 -1.1
3,604,153 - Psyr_3009 0.82 -1.6
3,604,164 + Psyr_3009 0.84 +0.0
3,604,165 - Psyr_3009 0.84 +0.5
3,604,165 - Psyr_3009 0.84 +0.5
3,604,165 - Psyr_3009 0.84 -0.8
3,604,182 + Psyr_3009 0.87 +0.6
3,604,183 - Psyr_3009 0.87 -1.7
3,604,311 + Psyr_3010 0.11 -0.3
3,604,311 + Psyr_3010 0.11 +0.4
3,604,312 - Psyr_3010 0.11 -0.3
3,604,312 - Psyr_3010 0.11 +0.1
3,604,318 + Psyr_3010 0.12 -1.3
3,604,318 + Psyr_3010 0.12 +0.2
3,604,318 + Psyr_3010 0.12 +0.3
3,604,319 - Psyr_3010 0.13 -0.5
3,604,319 - Psyr_3010 0.13 -1.2
3,604,319 - Psyr_3010 0.13 -1.6
3,604,319 - Psyr_3010 0.13 +0.0
3,604,319 - Psyr_3010 0.13 -0.8
3,604,319 - Psyr_3010 0.13 -0.3
3,604,319 - Psyr_3010 0.13 +0.0
3,604,346 + Psyr_3010 0.18 +0.2
3,604,398 + Psyr_3010 0.27 -0.1
3,604,562 + Psyr_3010 0.57 -0.5
3,604,803 + -0.6
3,604,908 + Psyr_3011 0.10 -1.8
3,604,908 + Psyr_3011 0.10 +0.2
3,604,909 - Psyr_3011 0.10 +0.5
3,605,118 + Psyr_3011 0.26 +2.2
3,605,118 + Psyr_3011 0.26 +1.8
3,605,118 + Psyr_3011 0.26 +2.2
3,605,119 - Psyr_3011 0.26 -0.6
3,605,119 - Psyr_3011 0.26 -0.1
3,605,195 + Psyr_3011 0.32 +0.7
3,605,195 + Psyr_3011 0.32 +0.0
3,605,195 + Psyr_3011 0.32 +0.4
3,605,196 - Psyr_3011 0.32 +2.6
3,605,196 - Psyr_3011 0.32 -0.4
3,605,196 - Psyr_3011 0.32 +1.2
3,605,196 - Psyr_3011 0.32 -0.6
3,605,196 - Psyr_3011 0.32 +0.6
3,605,196 - Psyr_3011 0.32 -0.3
3,605,196 - Psyr_3011 0.32 -0.0
3,605,196 - Psyr_3011 0.32 -0.3
3,605,196 - Psyr_3011 0.32 -0.1
3,605,196 - Psyr_3011 0.32 -1.6
3,605,209 - Psyr_3011 0.33 +0.6
3,605,209 - Psyr_3011 0.33 +0.4
3,605,211 + Psyr_3011 0.33 +0.9
3,605,211 + Psyr_3011 0.33 -0.7
3,605,212 - Psyr_3011 0.33 +1.2
3,605,557 + Psyr_3011 0.59 +1.1
3,605,557 + Psyr_3011 0.59 +0.0
3,605,558 - Psyr_3011 0.59 +0.2
3,605,954 + Psyr_3011 0.89 -0.1
3,605,954 + Psyr_3011 0.89 +1.2
3,605,955 - Psyr_3011 0.89 -0.3
3,605,955 - Psyr_3011 0.89 -0.4
3,605,955 - Psyr_3011 0.89 +0.4
3,606,121 - +0.2
3,606,147 + -0.7
3,606,148 - +0.2
3,606,188 - +0.2
3,606,299 + +0.2
3,606,352 - -0.7
3,606,352 - -2.2
3,606,393 - -0.4
3,606,393 - -1.4
3,606,583 + Psyr_3012 0.63 +1.5

Or see this region's nucleotide sequence