Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2507

Experiment: KB with Benzalkonium chloride 1.55 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2505 and Psyr_2506 overlap by 4 nucleotidesPsyr_2506 and Psyr_2507 are separated by 16 nucleotidesPsyr_2507 and Psyr_2508 are separated by 82 nucleotidesPsyr_2508 and Psyr_2509 are separated by 16 nucleotides Psyr_2505: Psyr_2505 - amino acid ABC transporter membrane protein 2, PAAT family, at 2,914,622 to 2,915,284 _2505 Psyr_2506: Psyr_2506 - amino acid ABC transporter ATP-binding protein, PAAT family, at 2,915,281 to 2,916,066 _2506 Psyr_2507: Psyr_2507 - Endoribonuclease L-PSP, at 2,916,083 to 2,916,493 _2507 Psyr_2508: Psyr_2508 - transcriptional regulator, IclR family, at 2,916,576 to 2,917,340 _2508 Psyr_2509: Psyr_2509 - conserved hypothetical protein, at 2,917,357 to 2,918,562 _2509 Position (kb) 2916 2917Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2915.179 kb on + strand, within Psyr_2505at 2915.180 kb on - strand, within Psyr_2505at 2915.231 kb on + strandat 2915.231 kb on + strandat 2915.232 kb on - strandat 2915.232 kb on - strandat 2915.295 kb on + strandat 2915.334 kb on + strandat 2915.335 kb on - strandat 2915.335 kb on - strandat 2915.519 kb on + strand, within Psyr_2506at 2915.519 kb on + strand, within Psyr_2506at 2915.519 kb on + strand, within Psyr_2506at 2916.112 kb on + strandat 2916.112 kb on + strandat 2916.113 kb on - strandat 2916.213 kb on + strand, within Psyr_2507at 2916.392 kb on + strand, within Psyr_2507at 2916.392 kb on + strand, within Psyr_2507at 2916.392 kb on + strand, within Psyr_2507at 2916.392 kb on + strand, within Psyr_2507at 2916.392 kb on + strand, within Psyr_2507at 2916.393 kb on - strand, within Psyr_2507at 2916.472 kb on + strandat 2916.473 kb on - strandat 2916.479 kb on + strandat 2916.491 kb on + strandat 2916.491 kb on + strandat 2916.491 kb on + strandat 2916.491 kb on + strandat 2916.492 kb on - strandat 2916.492 kb on - strandat 2916.492 kb on - strandat 2916.591 kb on - strandat 2916.780 kb on + strand, within Psyr_2508at 2916.780 kb on + strand, within Psyr_2508at 2916.798 kb on + strand, within Psyr_2508at 2916.799 kb on - strand, within Psyr_2508at 2916.799 kb on - strand, within Psyr_2508at 2916.799 kb on - strand, within Psyr_2508at 2916.799 kb on - strand, within Psyr_2508at 2916.921 kb on + strand, within Psyr_2508at 2916.922 kb on - strand, within Psyr_2508

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium chloride 1.55 ug/ml
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2,915,179 + Psyr_2505 0.84 -1.4
2,915,180 - Psyr_2505 0.84 +1.2
2,915,231 + -0.4
2,915,231 + +0.8
2,915,232 - -0.3
2,915,232 - +1.7
2,915,295 + +0.0
2,915,334 + +0.9
2,915,335 - +0.8
2,915,335 - -0.1
2,915,519 + Psyr_2506 0.30 -1.5
2,915,519 + Psyr_2506 0.30 -0.0
2,915,519 + Psyr_2506 0.30 +0.9
2,916,112 + +0.0
2,916,112 + +1.7
2,916,113 - +3.2
2,916,213 + Psyr_2507 0.32 +0.6
2,916,392 + Psyr_2507 0.75 -0.7
2,916,392 + Psyr_2507 0.75 +1.2
2,916,392 + Psyr_2507 0.75 -0.1
2,916,392 + Psyr_2507 0.75 +1.8
2,916,392 + Psyr_2507 0.75 -1.0
2,916,393 - Psyr_2507 0.75 -0.7
2,916,472 + -0.3
2,916,473 - -1.5
2,916,479 + +1.1
2,916,491 + -0.1
2,916,491 + -0.1
2,916,491 + -1.8
2,916,491 + +0.3
2,916,492 - +2.8
2,916,492 - +0.4
2,916,492 - +2.2
2,916,591 - +0.1
2,916,780 + Psyr_2508 0.27 -0.8
2,916,780 + Psyr_2508 0.27 +2.8
2,916,798 + Psyr_2508 0.29 -0.9
2,916,799 - Psyr_2508 0.29 -0.3
2,916,799 - Psyr_2508 0.29 +0.2
2,916,799 - Psyr_2508 0.29 -0.4
2,916,799 - Psyr_2508 0.29 +0.1
2,916,921 + Psyr_2508 0.45 +0.4
2,916,922 - Psyr_2508 0.45 +0.3

Or see this region's nucleotide sequence