Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1950

Experiment: KB with Benzalkonium chloride 1.55 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1948 and Psyr_1949 are separated by 0 nucleotidesPsyr_1949 and Psyr_1950 overlap by 1 nucleotidesPsyr_1950 and Psyr_1951 overlap by 4 nucleotidesPsyr_1951 and Psyr_1952 are separated by 35 nucleotides Psyr_1948: Psyr_1948 - ABC transporter, periplasmic substrate-binding protein, putative, at 2,233,389 to 2,234,306 _1948 Psyr_1949: Psyr_1949 - ABC-3, at 2,234,307 to 2,235,206 _1949 Psyr_1950: Psyr_1950 - ABC transporter, at 2,235,206 to 2,235,970 _1950 Psyr_1951: Psyr_1951 - Periplasmic solute binding protein, at 2,235,967 to 2,236,899 _1951 Psyr_1952: Psyr_1952 - hypothetical protein, at 2,236,935 to 2,237,501 _1952 Position (kb) 2235 2236Strain fitness (log2 ratio) -2 -1 0 1at 2234.291 kb on + strandat 2234.292 kb on - strandat 2234.295 kb on + strandat 2234.295 kb on + strandat 2234.296 kb on - strandat 2234.296 kb on - strandat 2234.689 kb on + strand, within Psyr_1949at 2234.689 kb on + strand, within Psyr_1949at 2234.911 kb on + strand, within Psyr_1949at 2234.911 kb on + strand, within Psyr_1949at 2234.959 kb on + strand, within Psyr_1949at 2235.200 kb on - strandat 2235.721 kb on - strand, within Psyr_1950at 2235.842 kb on + strand, within Psyr_1950at 2235.843 kb on - strand, within Psyr_1950at 2235.843 kb on - strand, within Psyr_1950at 2235.994 kb on + strandat 2236.031 kb on + strandat 2236.115 kb on + strand, within Psyr_1951at 2236.115 kb on + strand, within Psyr_1951at 2236.633 kb on + strand, within Psyr_1951at 2236.746 kb on + strand, within Psyr_1951at 2236.747 kb on - strand, within Psyr_1951at 2236.757 kb on + strand, within Psyr_1951at 2236.757 kb on + strand, within Psyr_1951at 2236.757 kb on + strand, within Psyr_1951at 2236.757 kb on + strand, within Psyr_1951at 2236.758 kb on - strand, within Psyr_1951at 2236.758 kb on - strand, within Psyr_1951at 2236.763 kb on + strand, within Psyr_1951at 2236.763 kb on + strand, within Psyr_1951at 2236.763 kb on + strand, within Psyr_1951at 2236.764 kb on - strand, within Psyr_1951at 2236.767 kb on - strand, within Psyr_1951

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium chloride 1.55 ug/ml
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2,234,291 + -0.9
2,234,292 - +0.6
2,234,295 + +0.2
2,234,295 + +0.6
2,234,296 - +1.6
2,234,296 - -1.0
2,234,689 + Psyr_1949 0.42 -0.6
2,234,689 + Psyr_1949 0.42 -0.6
2,234,911 + Psyr_1949 0.67 +0.8
2,234,911 + Psyr_1949 0.67 -0.6
2,234,959 + Psyr_1949 0.72 -1.2
2,235,200 - -0.1
2,235,721 - Psyr_1950 0.67 +1.0
2,235,842 + Psyr_1950 0.83 -0.1
2,235,843 - Psyr_1950 0.83 -0.3
2,235,843 - Psyr_1950 0.83 -0.1
2,235,994 + -1.1
2,236,031 + -0.1
2,236,115 + Psyr_1951 0.16 -0.3
2,236,115 + Psyr_1951 0.16 +0.1
2,236,633 + Psyr_1951 0.71 -2.0
2,236,746 + Psyr_1951 0.83 -1.1
2,236,747 - Psyr_1951 0.84 -2.0
2,236,757 + Psyr_1951 0.85 -0.1
2,236,757 + Psyr_1951 0.85 -0.2
2,236,757 + Psyr_1951 0.85 +0.6
2,236,757 + Psyr_1951 0.85 -0.3
2,236,758 - Psyr_1951 0.85 -0.3
2,236,758 - Psyr_1951 0.85 +0.3
2,236,763 + Psyr_1951 0.85 +0.8
2,236,763 + Psyr_1951 0.85 -0.2
2,236,763 + Psyr_1951 0.85 -0.8
2,236,764 - Psyr_1951 0.85 -1.6
2,236,767 - Psyr_1951 0.86 +0.0

Or see this region's nucleotide sequence