Experiment: KB with Benzalkonium chloride 1.55 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1948 and Psyr_1949 are separated by 0 nucleotides Psyr_1949 and Psyr_1950 overlap by 1 nucleotides Psyr_1950 and Psyr_1951 overlap by 4 nucleotides Psyr_1951 and Psyr_1952 are separated by 35 nucleotides
Psyr_1948: Psyr_1948 - ABC transporter, periplasmic substrate-binding protein, putative, at 2,233,389 to 2,234,306
_1948
Psyr_1949: Psyr_1949 - ABC-3, at 2,234,307 to 2,235,206
_1949
Psyr_1950: Psyr_1950 - ABC transporter, at 2,235,206 to 2,235,970
_1950
Psyr_1951: Psyr_1951 - Periplasmic solute binding protein, at 2,235,967 to 2,236,899
_1951
Psyr_1952: Psyr_1952 - hypothetical protein, at 2,236,935 to 2,237,501
_1952
Position (kb)
2235
2236 Strain fitness (log2 ratio)
-2
-1
0
1 at 2234.291 kb on + strand at 2234.292 kb on - strand at 2234.295 kb on + strand at 2234.295 kb on + strand at 2234.296 kb on - strand at 2234.296 kb on - strand at 2234.689 kb on + strand, within Psyr_1949 at 2234.689 kb on + strand, within Psyr_1949 at 2234.911 kb on + strand, within Psyr_1949 at 2234.911 kb on + strand, within Psyr_1949 at 2234.959 kb on + strand, within Psyr_1949 at 2235.200 kb on - strand at 2235.721 kb on - strand, within Psyr_1950 at 2235.842 kb on + strand, within Psyr_1950 at 2235.843 kb on - strand, within Psyr_1950 at 2235.843 kb on - strand, within Psyr_1950 at 2235.994 kb on + strand at 2236.031 kb on + strand at 2236.115 kb on + strand, within Psyr_1951 at 2236.115 kb on + strand, within Psyr_1951 at 2236.633 kb on + strand, within Psyr_1951 at 2236.746 kb on + strand, within Psyr_1951 at 2236.747 kb on - strand, within Psyr_1951 at 2236.757 kb on + strand, within Psyr_1951 at 2236.757 kb on + strand, within Psyr_1951 at 2236.757 kb on + strand, within Psyr_1951 at 2236.757 kb on + strand, within Psyr_1951 at 2236.758 kb on - strand, within Psyr_1951 at 2236.758 kb on - strand, within Psyr_1951 at 2236.763 kb on + strand, within Psyr_1951 at 2236.763 kb on + strand, within Psyr_1951 at 2236.763 kb on + strand, within Psyr_1951 at 2236.764 kb on - strand, within Psyr_1951 at 2236.767 kb on - strand, within Psyr_1951
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium chloride 1.55 ug/ml remove 2,234,291 + -0.9 2,234,292 - +0.6 2,234,295 + +0.2 2,234,295 + +0.6 2,234,296 - +1.6 2,234,296 - -1.0 2,234,689 + Psyr_1949 0.42 -0.6 2,234,689 + Psyr_1949 0.42 -0.6 2,234,911 + Psyr_1949 0.67 +0.8 2,234,911 + Psyr_1949 0.67 -0.6 2,234,959 + Psyr_1949 0.72 -1.2 2,235,200 - -0.1 2,235,721 - Psyr_1950 0.67 +1.0 2,235,842 + Psyr_1950 0.83 -0.1 2,235,843 - Psyr_1950 0.83 -0.3 2,235,843 - Psyr_1950 0.83 -0.1 2,235,994 + -1.1 2,236,031 + -0.1 2,236,115 + Psyr_1951 0.16 -0.3 2,236,115 + Psyr_1951 0.16 +0.1 2,236,633 + Psyr_1951 0.71 -2.0 2,236,746 + Psyr_1951 0.83 -1.1 2,236,747 - Psyr_1951 0.84 -2.0 2,236,757 + Psyr_1951 0.85 -0.1 2,236,757 + Psyr_1951 0.85 -0.2 2,236,757 + Psyr_1951 0.85 +0.6 2,236,757 + Psyr_1951 0.85 -0.3 2,236,758 - Psyr_1951 0.85 -0.3 2,236,758 - Psyr_1951 0.85 +0.3 2,236,763 + Psyr_1951 0.85 +0.8 2,236,763 + Psyr_1951 0.85 -0.2 2,236,763 + Psyr_1951 0.85 -0.8 2,236,764 - Psyr_1951 0.85 -1.6 2,236,767 - Psyr_1951 0.86 +0.0
Or see this region's nucleotide sequence