Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1276

Experiment: KB with Benzalkonium chloride 1.55 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1276 and Psyr_1277 are separated by 103 nucleotides Psyr_1276: Psyr_1276 - conserved hypothetical protein, at 1,441,772 to 1,442,239 _1276 Psyr_1277: Psyr_1277 - formate-dependent phosphoribosylglycinamide formyltransferase, at 1,442,343 to 1,443,524 _1277 Position (kb) 1441 1442 1443Strain fitness (log2 ratio) -2 -1 0 1 2at 1441.690 kb on + strandat 1441.790 kb on + strandat 1441.790 kb on + strandat 1441.791 kb on - strandat 1441.791 kb on - strandat 1441.955 kb on + strand, within Psyr_1276at 1441.955 kb on + strand, within Psyr_1276at 1441.955 kb on + strand, within Psyr_1276at 1441.955 kb on + strand, within Psyr_1276at 1441.955 kb on + strand, within Psyr_1276at 1441.955 kb on + strand, within Psyr_1276at 1441.955 kb on + strand, within Psyr_1276at 1441.955 kb on + strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1441.956 kb on - strand, within Psyr_1276at 1442.101 kb on + strand, within Psyr_1276at 1442.101 kb on + strand, within Psyr_1276at 1442.102 kb on - strand, within Psyr_1276at 1442.107 kb on + strand, within Psyr_1276at 1442.108 kb on - strand, within Psyr_1276at 1442.108 kb on - strand, within Psyr_1276at 1442.266 kb on - strandat 1442.266 kb on - strandat 1442.266 kb on - strandat 1442.301 kb on + strandat 1442.301 kb on + strandat 1442.473 kb on - strand, within Psyr_1277at 1442.880 kb on + strand, within Psyr_1277at 1442.947 kb on - strand, within Psyr_1277

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium chloride 1.55 ug/ml
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1,441,690 + -1.6
1,441,790 + +1.8
1,441,790 + +0.5
1,441,791 - -0.0
1,441,791 - +0.6
1,441,955 + Psyr_1276 0.39 -0.2
1,441,955 + Psyr_1276 0.39 +0.3
1,441,955 + Psyr_1276 0.39 -0.7
1,441,955 + Psyr_1276 0.39 +0.2
1,441,955 + Psyr_1276 0.39 +1.2
1,441,955 + Psyr_1276 0.39 +0.7
1,441,955 + Psyr_1276 0.39 +1.2
1,441,955 + Psyr_1276 0.39 +0.3
1,441,956 - Psyr_1276 0.39 +0.1
1,441,956 - Psyr_1276 0.39 +0.4
1,441,956 - Psyr_1276 0.39 +0.4
1,441,956 - Psyr_1276 0.39 -1.4
1,441,956 - Psyr_1276 0.39 -2.2
1,441,956 - Psyr_1276 0.39 +0.3
1,441,956 - Psyr_1276 0.39 +0.2
1,441,956 - Psyr_1276 0.39 +0.1
1,442,101 + Psyr_1276 0.70 -1.2
1,442,101 + Psyr_1276 0.70 +2.4
1,442,102 - Psyr_1276 0.71 -1.2
1,442,107 + Psyr_1276 0.72 +0.4
1,442,108 - Psyr_1276 0.72 -1.0
1,442,108 - Psyr_1276 0.72 +0.6
1,442,266 - -0.6
1,442,266 - -0.4
1,442,266 - -0.7
1,442,301 + +0.1
1,442,301 + -0.7
1,442,473 - Psyr_1277 0.11 +0.2
1,442,880 + Psyr_1277 0.45 +2.0
1,442,947 - Psyr_1277 0.51 -1.4

Or see this region's nucleotide sequence