Experiment: 2-6-dihydroxybenzoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6010 and Atu6011 are separated by 337 nucleotides Atu6011 and Atu6012 are separated by 697 nucleotides
Atu6010: Atu6010 - indole acetamide hydrolase, at 14,631 to 16,034
Atu6010
Atu6011: Atu6011 - tryptophan 2-monooxygenase, at 16,372 to 18,639
Atu6011
Atu6012: Atu6012 - isopentenyl transferase, at 19,337 to 20,059
Atu6012
Position (kb) 16
17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 15.383 kb on - strand, within Atu6010 at 15.417 kb on + strand, within Atu6010 at 15.417 kb on + strand, within Atu6010 at 15.417 kb on + strand, within Atu6010 at 15.417 kb on + strand, within Atu6010 at 15.425 kb on - strand, within Atu6010 at 15.427 kb on + strand, within Atu6010 at 15.430 kb on - strand, within Atu6010 at 15.430 kb on - strand, within Atu6010 at 15.437 kb on + strand, within Atu6010 at 15.440 kb on - strand, within Atu6010 at 15.449 kb on - strand, within Atu6010 at 15.451 kb on + strand, within Atu6010 at 15.469 kb on - strand, within Atu6010 at 15.487 kb on + strand, within Atu6010 at 15.492 kb on + strand, within Atu6010 at 15.492 kb on + strand, within Atu6010 at 15.495 kb on - strand, within Atu6010 at 15.495 kb on - strand, within Atu6010 at 15.495 kb on - strand, within Atu6010 at 15.495 kb on - strand, within Atu6010 at 15.497 kb on + strand, within Atu6010 at 15.497 kb on + strand, within Atu6010 at 15.505 kb on - strand, within Atu6010 at 15.515 kb on + strand, within Atu6010 at 15.573 kb on + strand, within Atu6010 at 15.581 kb on - strand, within Atu6010 at 15.581 kb on - strand, within Atu6010 at 15.583 kb on + strand, within Atu6010 at 15.585 kb on + strand, within Atu6010 at 15.605 kb on + strand, within Atu6010 at 15.613 kb on - strand, within Atu6010 at 15.648 kb on - strand, within Atu6010 at 15.693 kb on + strand, within Atu6010 at 15.754 kb on + strand, within Atu6010 at 15.762 kb on - strand, within Atu6010 at 15.812 kb on + strand, within Atu6010 at 15.812 kb on + strand, within Atu6010 at 15.812 kb on + strand, within Atu6010 at 15.812 kb on + strand, within Atu6010 at 15.812 kb on + strand, within Atu6010 at 15.812 kb on + strand, within Atu6010 at 15.820 kb on - strand, within Atu6010 at 15.820 kb on - strand, within Atu6010 at 15.820 kb on - strand, within Atu6010 at 15.844 kb on + strand, within Atu6010 at 15.847 kb on - strand, within Atu6010 at 15.898 kb on - strand at 15.901 kb on + strand at 15.975 kb on + strand at 15.983 kb on - strand at 15.998 kb on + strand at 15.998 kb on + strand at 16.006 kb on - strand at 16.013 kb on - strand at 16.097 kb on - strand at 16.192 kb on - strand at 16.222 kb on + strand at 16.222 kb on + strand at 16.280 kb on - strand at 16.291 kb on - strand at 16.291 kb on - strand at 16.325 kb on + strand at 16.491 kb on + strand at 16.536 kb on + strand at 16.546 kb on + strand at 16.546 kb on + strand at 16.546 kb on + strand at 16.554 kb on - strand at 16.554 kb on - strand at 16.574 kb on - strand at 16.597 kb on + strand at 16.597 kb on + strand at 16.605 kb on - strand, within Atu6011 at 16.640 kb on + strand, within Atu6011 at 16.680 kb on - strand, within Atu6011 at 16.687 kb on + strand, within Atu6011 at 16.807 kb on - strand, within Atu6011 at 16.827 kb on + strand, within Atu6011 at 16.827 kb on + strand, within Atu6011 at 16.827 kb on + strand, within Atu6011 at 16.827 kb on + strand, within Atu6011 at 16.835 kb on - strand, within Atu6011 at 16.835 kb on - strand, within Atu6011 at 16.835 kb on - strand, within Atu6011 at 16.835 kb on - strand, within Atu6011 at 16.842 kb on + strand, within Atu6011 at 16.842 kb on + strand, within Atu6011 at 16.842 kb on + strand, within Atu6011 at 16.850 kb on - strand, within Atu6011 at 16.850 kb on - strand, within Atu6011 at 16.850 kb on - strand, within Atu6011 at 16.850 kb on - strand, within Atu6011 at 16.850 kb on - strand, within Atu6011 at 16.898 kb on + strand, within Atu6011 at 16.898 kb on + strand, within Atu6011 at 16.898 kb on + strand, within Atu6011 at 16.898 kb on + strand, within Atu6011 at 16.898 kb on + strand, within Atu6011 at 16.903 kb on + strand, within Atu6011 at 16.903 kb on + strand, within Atu6011 at 16.903 kb on + strand, within Atu6011 at 16.903 kb on + strand, within Atu6011 at 16.906 kb on - strand, within Atu6011 at 16.906 kb on - strand, within Atu6011 at 16.906 kb on - strand, within Atu6011 at 16.910 kb on + strand, within Atu6011 at 16.910 kb on + strand, within Atu6011 at 16.911 kb on - strand, within Atu6011 at 16.911 kb on - strand, within Atu6011 at 16.911 kb on - strand, within Atu6011 at 16.912 kb on + strand, within Atu6011 at 16.918 kb on - strand, within Atu6011 at 16.918 kb on - strand, within Atu6011 at 16.918 kb on - strand, within Atu6011 at 16.918 kb on - strand, within Atu6011 at 16.920 kb on + strand, within Atu6011 at 16.956 kb on + strand, within Atu6011 at 16.957 kb on - strand, within Atu6011 at 16.962 kb on + strand, within Atu6011 at 16.991 kb on + strand, within Atu6011 at 17.001 kb on + strand, within Atu6011 at 17.009 kb on - strand, within Atu6011 at 17.049 kb on + strand, within Atu6011 at 17.144 kb on - strand, within Atu6011 at 17.146 kb on + strand, within Atu6011 at 17.154 kb on - strand, within Atu6011 at 17.196 kb on + strand, within Atu6011 at 17.204 kb on - strand, within Atu6011 at 17.204 kb on - strand, within Atu6011 at 17.218 kb on - strand, within Atu6011 at 17.244 kb on - strand, within Atu6011 at 17.345 kb on + strand, within Atu6011 at 17.353 kb on - strand, within Atu6011 at 17.360 kb on + strand, within Atu6011 at 17.366 kb on + strand, within Atu6011 at 17.376 kb on + strand, within Atu6011 at 17.402 kb on - strand, within Atu6011 at 17.435 kb on - strand, within Atu6011 at 17.461 kb on - strand, within Atu6011 at 17.461 kb on - strand, within Atu6011 at 17.486 kb on - strand, within Atu6011 at 17.520 kb on + strand, within Atu6011 at 17.520 kb on + strand, within Atu6011 at 17.530 kb on + strand, within Atu6011 at 17.582 kb on - strand, within Atu6011 at 17.587 kb on + strand, within Atu6011 at 17.597 kb on + strand, within Atu6011 at 17.639 kb on + strand, within Atu6011 at 17.659 kb on - strand, within Atu6011 at 17.683 kb on - strand, within Atu6011 at 17.714 kb on + strand, within Atu6011 at 17.737 kb on + strand, within Atu6011 at 17.747 kb on + strand, within Atu6011 at 17.766 kb on + strand, within Atu6011 at 17.774 kb on - strand, within Atu6011 at 17.817 kb on + strand, within Atu6011 at 17.817 kb on + strand, within Atu6011 at 17.817 kb on + strand, within Atu6011 at 17.818 kb on - strand, within Atu6011 at 17.831 kb on + strand, within Atu6011 at 17.831 kb on + strand, within Atu6011 at 17.831 kb on + strand, within Atu6011 at 17.831 kb on + strand, within Atu6011 at 17.839 kb on - strand, within Atu6011 at 17.839 kb on - strand, within Atu6011 at 17.839 kb on - strand, within Atu6011 at 17.851 kb on - strand, within Atu6011 at 17.862 kb on - strand, within Atu6011 at 17.862 kb on - strand, within Atu6011 at 17.867 kb on - strand, within Atu6011 at 17.909 kb on - strand, within Atu6011 at 17.945 kb on + strand, within Atu6011 at 17.953 kb on - strand, within Atu6011 at 17.976 kb on + strand, within Atu6011 at 18.010 kb on + strand, within Atu6011 at 18.018 kb on - strand, within Atu6011 at 18.018 kb on - strand, within Atu6011 at 18.018 kb on - strand, within Atu6011 at 18.021 kb on + strand, within Atu6011 at 18.044 kb on - strand, within Atu6011 at 18.091 kb on + strand, within Atu6011 at 18.100 kb on + strand, within Atu6011 at 18.100 kb on + strand, within Atu6011 at 18.102 kb on + strand, within Atu6011 at 18.108 kb on - strand, within Atu6011 at 18.115 kb on - strand, within Atu6011 at 18.136 kb on + strand, within Atu6011 at 18.139 kb on + strand, within Atu6011 at 18.141 kb on + strand, within Atu6011 at 18.146 kb on + strand, within Atu6011 at 18.146 kb on + strand, within Atu6011 at 18.154 kb on - strand, within Atu6011 at 18.181 kb on + strand, within Atu6011 at 18.190 kb on - strand, within Atu6011 at 18.200 kb on + strand, within Atu6011 at 18.205 kb on - strand, within Atu6011 at 18.208 kb on - strand, within Atu6011 at 18.218 kb on + strand, within Atu6011 at 18.219 kb on + strand, within Atu6011 at 18.328 kb on + strand, within Atu6011 at 18.346 kb on + strand, within Atu6011 at 18.377 kb on - strand, within Atu6011 at 18.450 kb on - strand at 18.503 kb on - strand at 18.506 kb on + strand at 18.518 kb on + strand at 18.531 kb on - strand at 18.532 kb on + strand at 18.585 kb on + strand at 18.593 kb on - strand at 18.622 kb on - strand at 19.097 kb on + strand at 19.130 kb on + strand at 19.130 kb on + strand at 19.138 kb on - strand at 19.138 kb on - strand at 19.140 kb on + strand at 19.183 kb on - strand at 19.217 kb on - strand at 19.221 kb on + strand at 19.224 kb on - strand at 19.295 kb on - strand at 19.381 kb on - strand at 19.381 kb on - strand at 19.397 kb on - strand at 19.408 kb on + strand at 19.423 kb on + strand, within Atu6012 at 19.431 kb on - strand, within Atu6012 at 19.439 kb on + strand, within Atu6012 at 19.446 kb on - strand, within Atu6012 at 19.446 kb on - strand, within Atu6012 at 19.446 kb on - strand, within Atu6012 at 19.446 kb on - strand, within Atu6012 at 19.446 kb on - strand, within Atu6012 at 19.447 kb on - strand, within Atu6012 at 19.457 kb on - strand, within Atu6012 at 19.490 kb on - strand, within Atu6012 at 19.508 kb on + strand, within Atu6012 at 19.509 kb on + strand, within Atu6012 at 19.509 kb on + strand, within Atu6012 at 19.509 kb on + strand, within Atu6012 at 19.509 kb on + strand, within Atu6012 at 19.509 kb on + strand, within Atu6012 at 19.509 kb on + strand, within Atu6012 at 19.517 kb on - strand, within Atu6012 at 19.517 kb on - strand, within Atu6012 at 19.528 kb on - strand, within Atu6012 at 19.534 kb on + strand, within Atu6012 at 19.540 kb on + strand, within Atu6012 at 19.542 kb on - strand, within Atu6012 at 19.548 kb on - strand, within Atu6012 at 19.576 kb on + strand, within Atu6012 at 19.586 kb on + strand, within Atu6012 at 19.586 kb on + strand, within Atu6012 at 19.600 kb on + strand, within Atu6012 at 19.611 kb on + strand, within Atu6012 at 19.629 kb on + strand, within Atu6012 at 19.632 kb on + strand, within Atu6012 at 19.637 kb on - strand, within Atu6012
Per-strain Table
Position Strand Gene LocusTag Fraction 2-6-dihydroxybenzoic (C) remove 15,383 - Atu6010 0.54 -0.4 15,417 + Atu6010 0.56 +0.9 15,417 + Atu6010 0.56 -1.4 15,417 + Atu6010 0.56 -0.0 15,417 + Atu6010 0.56 -1.0 15,425 - Atu6010 0.57 -0.4 15,427 + Atu6010 0.57 -0.6 15,430 - Atu6010 0.57 -0.6 15,430 - Atu6010 0.57 -0.2 15,437 + Atu6010 0.57 -0.3 15,440 - Atu6010 0.58 -0.9 15,449 - Atu6010 0.58 +0.1 15,451 + Atu6010 0.58 -0.1 15,469 - Atu6010 0.60 -0.2 15,487 + Atu6010 0.61 -0.1 15,492 + Atu6010 0.61 +0.4 15,492 + Atu6010 0.61 +1.5 15,495 - Atu6010 0.62 -1.2 15,495 - Atu6010 0.62 +2.2 15,495 - Atu6010 0.62 -0.3 15,495 - Atu6010 0.62 -1.2 15,497 + Atu6010 0.62 -0.2 15,497 + Atu6010 0.62 -0.6 15,505 - Atu6010 0.62 +0.2 15,515 + Atu6010 0.63 -0.1 15,573 + Atu6010 0.67 -0.7 15,581 - Atu6010 0.68 -0.9 15,581 - Atu6010 0.68 -0.2 15,583 + Atu6010 0.68 +0.4 15,585 + Atu6010 0.68 -0.2 15,605 + Atu6010 0.69 -0.2 15,613 - Atu6010 0.70 -0.9 15,648 - Atu6010 0.72 -0.4 15,693 + Atu6010 0.76 -2.9 15,754 + Atu6010 0.80 -0.5 15,762 - Atu6010 0.81 +0.9 15,812 + Atu6010 0.84 +0.0 15,812 + Atu6010 0.84 +0.1 15,812 + Atu6010 0.84 +0.5 15,812 + Atu6010 0.84 -0.0 15,812 + Atu6010 0.84 -0.2 15,812 + Atu6010 0.84 -0.5 15,820 - Atu6010 0.85 +0.5 15,820 - Atu6010 0.85 -0.6 15,820 - Atu6010 0.85 +0.3 15,844 + Atu6010 0.86 -0.6 15,847 - Atu6010 0.87 -0.8 15,898 - +0.7 15,901 + +0.4 15,975 + -0.2 15,983 - -0.6 15,998 + +0.0 15,998 + -0.1 16,006 - -0.9 16,013 - -1.4 16,097 - -0.8 16,192 - -0.3 16,222 + +0.3 16,222 + +0.2 16,280 - +1.2 16,291 - -1.5 16,291 - -0.2 16,325 + +0.2 16,491 + -1.4 16,536 + -0.8 16,546 + -1.0 16,546 + -0.2 16,546 + +0.4 16,554 - -0.6 16,554 - -1.2 16,574 - +0.4 16,597 + -0.8 16,597 + -0.4 16,605 - Atu6011 0.10 -0.2 16,640 + Atu6011 0.12 -0.5 16,680 - Atu6011 0.14 -1.6 16,687 + Atu6011 0.14 -0.3 16,807 - Atu6011 0.19 -0.7 16,827 + Atu6011 0.20 +1.1 16,827 + Atu6011 0.20 +0.6 16,827 + Atu6011 0.20 -0.0 16,827 + Atu6011 0.20 -0.6 16,835 - Atu6011 0.20 -0.0 16,835 - Atu6011 0.20 -1.0 16,835 - Atu6011 0.20 +0.0 16,835 - Atu6011 0.20 -0.9 16,842 + Atu6011 0.21 +0.2 16,842 + Atu6011 0.21 -0.9 16,842 + Atu6011 0.21 -0.3 16,850 - Atu6011 0.21 -0.0 16,850 - Atu6011 0.21 +1.2 16,850 - Atu6011 0.21 +0.1 16,850 - Atu6011 0.21 -1.2 16,850 - Atu6011 0.21 -1.3 16,898 + Atu6011 0.23 -0.1 16,898 + Atu6011 0.23 -0.5 16,898 + Atu6011 0.23 +0.4 16,898 + Atu6011 0.23 +0.1 16,898 + Atu6011 0.23 +0.0 16,903 + Atu6011 0.23 +0.1 16,903 + Atu6011 0.23 -1.5 16,903 + Atu6011 0.23 +0.7 16,903 + Atu6011 0.23 -1.1 16,906 - Atu6011 0.24 -0.6 16,906 - Atu6011 0.24 -0.9 16,906 - Atu6011 0.24 -0.9 16,910 + Atu6011 0.24 +0.2 16,910 + Atu6011 0.24 +0.1 16,911 - Atu6011 0.24 -0.5 16,911 - Atu6011 0.24 -0.4 16,911 - Atu6011 0.24 -0.4 16,912 + Atu6011 0.24 -0.4 16,918 - Atu6011 0.24 -0.3 16,918 - Atu6011 0.24 -0.7 16,918 - Atu6011 0.24 -0.6 16,918 - Atu6011 0.24 -2.0 16,920 + Atu6011 0.24 -0.8 16,956 + Atu6011 0.26 +1.2 16,957 - Atu6011 0.26 -1.2 16,962 + Atu6011 0.26 -0.2 16,991 + Atu6011 0.27 -0.3 17,001 + Atu6011 0.28 -0.2 17,009 - Atu6011 0.28 +1.1 17,049 + Atu6011 0.30 +1.2 17,144 - Atu6011 0.34 +0.7 17,146 + Atu6011 0.34 +0.6 17,154 - Atu6011 0.34 +0.3 17,196 + Atu6011 0.36 -1.6 17,204 - Atu6011 0.37 -0.5 17,204 - Atu6011 0.37 -0.1 17,218 - Atu6011 0.37 +0.3 17,244 - Atu6011 0.38 -0.5 17,345 + Atu6011 0.43 -1.3 17,353 - Atu6011 0.43 -0.2 17,360 + Atu6011 0.44 -2.8 17,366 + Atu6011 0.44 -1.1 17,376 + Atu6011 0.44 -0.0 17,402 - Atu6011 0.45 +0.4 17,435 - Atu6011 0.47 -0.1 17,461 - Atu6011 0.48 -0.8 17,461 - Atu6011 0.48 -0.4 17,486 - Atu6011 0.49 -1.5 17,520 + Atu6011 0.51 -0.2 17,520 + Atu6011 0.51 -3.2 17,530 + Atu6011 0.51 -0.5 17,582 - Atu6011 0.53 +0.2 17,587 + Atu6011 0.54 -0.3 17,597 + Atu6011 0.54 +0.4 17,639 + Atu6011 0.56 -0.4 17,659 - Atu6011 0.57 -0.7 17,683 - Atu6011 0.58 +0.3 17,714 + Atu6011 0.59 -0.7 17,737 + Atu6011 0.60 -0.5 17,747 + Atu6011 0.61 -0.1 17,766 + Atu6011 0.61 +0.3 17,774 - Atu6011 0.62 -0.6 17,817 + Atu6011 0.64 -0.3 17,817 + Atu6011 0.64 -1.3 17,817 + Atu6011 0.64 -0.9 17,818 - Atu6011 0.64 +0.2 17,831 + Atu6011 0.64 -0.2 17,831 + Atu6011 0.64 -2.3 17,831 + Atu6011 0.64 +0.2 17,831 + Atu6011 0.64 -0.4 17,839 - Atu6011 0.65 -0.2 17,839 - Atu6011 0.65 +0.7 17,839 - Atu6011 0.65 -1.6 17,851 - Atu6011 0.65 -0.2 17,862 - Atu6011 0.66 -0.1 17,862 - Atu6011 0.66 -0.5 17,867 - Atu6011 0.66 -0.4 17,909 - Atu6011 0.68 -0.1 17,945 + Atu6011 0.69 -0.2 17,953 - Atu6011 0.70 -0.6 17,976 + Atu6011 0.71 -0.7 18,010 + Atu6011 0.72 -0.2 18,018 - Atu6011 0.73 -0.4 18,018 - Atu6011 0.73 +0.1 18,018 - Atu6011 0.73 -0.2 18,021 + Atu6011 0.73 +0.0 18,044 - Atu6011 0.74 -0.0 18,091 + Atu6011 0.76 +0.1 18,100 + Atu6011 0.76 +0.1 18,100 + Atu6011 0.76 +0.6 18,102 + Atu6011 0.76 -1.7 18,108 - Atu6011 0.77 -0.5 18,115 - Atu6011 0.77 -1.7 18,136 + Atu6011 0.78 -0.6 18,139 + Atu6011 0.78 -1.6 18,141 + Atu6011 0.78 -1.0 18,146 + Atu6011 0.78 +0.5 18,146 + Atu6011 0.78 +0.8 18,154 - Atu6011 0.79 +0.2 18,181 + Atu6011 0.80 -0.1 18,190 - Atu6011 0.80 -0.3 18,200 + Atu6011 0.81 -0.2 18,205 - Atu6011 0.81 -0.6 18,208 - Atu6011 0.81 -1.4 18,218 + Atu6011 0.81 -0.2 18,219 + Atu6011 0.81 -0.4 18,328 + Atu6011 0.86 +0.8 18,346 + Atu6011 0.87 -0.7 18,377 - Atu6011 0.88 +0.2 18,450 - -0.0 18,503 - -1.1 18,506 + -0.6 18,518 + +0.7 18,531 - -0.2 18,532 + +0.8 18,585 + +0.1 18,593 - -0.3 18,622 - +0.1 19,097 + -0.6 19,130 + -0.8 19,130 + +1.0 19,138 - -0.9 19,138 - -0.5 19,140 + -0.5 19,183 - +0.3 19,217 - -0.1 19,221 + +0.4 19,224 - -0.5 19,295 - -0.1 19,381 - -0.2 19,381 - +0.2 19,397 - +0.8 19,408 + -0.3 19,423 + Atu6012 0.12 +0.6 19,431 - Atu6012 0.13 -0.1 19,439 + Atu6012 0.14 +1.6 19,446 - Atu6012 0.15 -0.9 19,446 - Atu6012 0.15 -0.4 19,446 - Atu6012 0.15 -0.3 19,446 - Atu6012 0.15 +2.0 19,446 - Atu6012 0.15 -1.6 19,447 - Atu6012 0.15 -0.6 19,457 - Atu6012 0.17 +1.0 19,490 - Atu6012 0.21 -1.0 19,508 + Atu6012 0.24 +0.3 19,509 + Atu6012 0.24 +0.1 19,509 + Atu6012 0.24 -1.5 19,509 + Atu6012 0.24 -0.5 19,509 + Atu6012 0.24 -0.0 19,509 + Atu6012 0.24 -1.0 19,509 + Atu6012 0.24 +0.1 19,517 - Atu6012 0.25 +0.6 19,517 - Atu6012 0.25 -0.7 19,528 - Atu6012 0.26 -0.3 19,534 + Atu6012 0.27 -1.1 19,540 + Atu6012 0.28 -1.2 19,542 - Atu6012 0.28 -1.1 19,548 - Atu6012 0.29 -1.5 19,576 + Atu6012 0.33 -0.0 19,586 + Atu6012 0.34 -1.8 19,586 + Atu6012 0.34 +0.0 19,600 + Atu6012 0.36 -0.6 19,611 + Atu6012 0.38 -0.9 19,629 + Atu6012 0.40 -0.8 19,632 + Atu6012 0.41 -0.3 19,637 - Atu6012 0.41 -0.1
Or see this region's nucleotide sequence