Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4867

Experiment: KB with Methanol 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4866 and Psyr_4867 are separated by 68 nucleotidesPsyr_4867 and Psyr_4868 are separated by 594 nucleotides Psyr_4866: Psyr_4866 - Aminotransferase class-III, at 5,774,961 to 5,776,325 _4866 Psyr_4867: Psyr_4867 - L-glutamine synthetase, at 5,776,394 to 5,777,752 _4867 Psyr_4868: Psyr_4868 - glutamate--putrescine ligase, at 5,778,347 to 5,779,723 _4868 Position (kb) 5776 5777 5778Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5775.439 kb on - strand, within Psyr_4866at 5775.442 kb on + strand, within Psyr_4866at 5775.493 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.922 kb on + strand, within Psyr_4866at 5775.923 kb on - strand, within Psyr_4866at 5775.923 kb on - strand, within Psyr_4866at 5776.069 kb on + strand, within Psyr_4866at 5776.069 kb on + strand, within Psyr_4866at 5776.069 kb on + strand, within Psyr_4866at 5776.069 kb on + strand, within Psyr_4866at 5776.070 kb on - strand, within Psyr_4866at 5776.070 kb on - strand, within Psyr_4866at 5776.070 kb on - strand, within Psyr_4866at 5776.070 kb on - strand, within Psyr_4866at 5776.070 kb on - strand, within Psyr_4866at 5776.070 kb on - strand, within Psyr_4866at 5776.195 kb on + strandat 5776.249 kb on + strandat 5776.588 kb on - strand, within Psyr_4867at 5776.675 kb on - strand, within Psyr_4867at 5776.930 kb on + strand, within Psyr_4867at 5777.187 kb on + strand, within Psyr_4867at 5777.188 kb on - strand, within Psyr_4867at 5777.188 kb on - strand, within Psyr_4867at 5777.323 kb on - strand, within Psyr_4867at 5777.436 kb on + strand, within Psyr_4867at 5777.436 kb on + strand, within Psyr_4867at 5777.436 kb on + strand, within Psyr_4867at 5777.436 kb on + strand, within Psyr_4867at 5777.437 kb on - strand, within Psyr_4867at 5777.437 kb on - strand, within Psyr_4867at 5777.437 kb on - strand, within Psyr_4867at 5777.487 kb on + strand, within Psyr_4867at 5777.488 kb on - strand, within Psyr_4867at 5777.488 kb on - strand, within Psyr_4867at 5777.547 kb on + strand, within Psyr_4867at 5777.547 kb on + strand, within Psyr_4867at 5777.547 kb on + strand, within Psyr_4867at 5777.547 kb on + strand, within Psyr_4867at 5777.547 kb on + strand, within Psyr_4867at 5777.548 kb on - strand, within Psyr_4867at 5777.548 kb on - strand, within Psyr_4867at 5777.550 kb on + strand, within Psyr_4867at 5777.550 kb on + strand, within Psyr_4867at 5777.550 kb on + strand, within Psyr_4867at 5777.550 kb on + strand, within Psyr_4867at 5777.551 kb on - strand, within Psyr_4867at 5777.551 kb on - strand, within Psyr_4867at 5777.551 kb on - strand, within Psyr_4867at 5777.551 kb on - strand, within Psyr_4867at 5777.554 kb on + strand, within Psyr_4867at 5777.554 kb on + strand, within Psyr_4867at 5777.554 kb on + strand, within Psyr_4867at 5777.554 kb on + strand, within Psyr_4867at 5777.564 kb on + strand, within Psyr_4867at 5777.564 kb on + strand, within Psyr_4867at 5777.564 kb on + strand, within Psyr_4867at 5777.565 kb on - strand, within Psyr_4867at 5777.565 kb on - strand, within Psyr_4867at 5777.565 kb on - strand, within Psyr_4867at 5777.568 kb on + strand, within Psyr_4867at 5777.568 kb on + strand, within Psyr_4867at 5777.568 kb on + strand, within Psyr_4867at 5777.568 kb on + strand, within Psyr_4867at 5777.569 kb on - strand, within Psyr_4867at 5777.569 kb on - strand, within Psyr_4867at 5777.569 kb on - strand, within Psyr_4867at 5777.569 kb on - strand, within Psyr_4867at 5777.747 kb on - strandat 5777.752 kb on + strandat 5777.752 kb on + strandat 5777.752 kb on + strandat 5777.752 kb on + strandat 5777.752 kb on + strandat 5777.753 kb on - strandat 5777.753 kb on - strandat 5777.753 kb on - strandat 5777.753 kb on - strandat 5777.756 kb on + strandat 5777.756 kb on + strandat 5777.756 kb on + strandat 5777.756 kb on + strandat 5777.757 kb on - strandat 5777.757 kb on - strandat 5777.757 kb on - strandat 5777.757 kb on - strandat 5777.757 kb on - strandat 5777.757 kb on - strandat 5777.757 kb on - strandat 5777.757 kb on - strandat 5777.769 kb on + strandat 5777.770 kb on - strandat 5777.770 kb on - strandat 5777.770 kb on - strandat 5777.818 kb on + strandat 5777.818 kb on + strandat 5777.818 kb on + strandat 5777.818 kb on + strandat 5777.818 kb on + strandat 5777.819 kb on - strandat 5777.819 kb on - strandat 5777.819 kb on - strandat 5777.819 kb on - strandat 5777.819 kb on - strandat 5777.850 kb on + strandat 5777.911 kb on + strandat 5777.911 kb on + strandat 5777.911 kb on + strandat 5777.918 kb on - strandat 5778.027 kb on + strandat 5778.027 kb on + strandat 5778.094 kb on - strandat 5778.155 kb on + strandat 5778.233 kb on + strandat 5778.247 kb on - strandat 5778.264 kb on + strandat 5778.265 kb on - strandat 5778.419 kb on + strandat 5778.419 kb on + strandat 5778.419 kb on + strandat 5778.420 kb on - strandat 5778.420 kb on - strandat 5778.442 kb on + strandat 5778.442 kb on + strandat 5778.442 kb on + strandat 5778.443 kb on - strandat 5778.443 kb on - strandat 5778.443 kb on - strandat 5778.443 kb on - strandat 5778.490 kb on + strand, within Psyr_4868at 5778.498 kb on - strand, within Psyr_4868at 5778.528 kb on + strand, within Psyr_4868at 5778.528 kb on + strand, within Psyr_4868at 5778.529 kb on - strand, within Psyr_4868at 5778.529 kb on - strand, within Psyr_4868at 5778.529 kb on - strand, within Psyr_4868at 5778.542 kb on - strand, within Psyr_4868at 5778.723 kb on + strand, within Psyr_4868at 5778.723 kb on + strand, within Psyr_4868at 5778.723 kb on + strand, within Psyr_4868at 5778.723 kb on + strand, within Psyr_4868at 5778.723 kb on + strand, within Psyr_4868at 5778.724 kb on - strand, within Psyr_4868

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
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5,775,439 - Psyr_4866 0.35 +1.4
5,775,442 + Psyr_4866 0.35 +1.3
5,775,493 + Psyr_4866 0.39 +0.4
5,775,820 + Psyr_4866 0.63 -0.6
5,775,820 + Psyr_4866 0.63 +0.3
5,775,820 + Psyr_4866 0.63 -0.3
5,775,820 + Psyr_4866 0.63 +0.5
5,775,820 + Psyr_4866 0.63 -0.8
5,775,820 + Psyr_4866 0.63 -0.5
5,775,820 + Psyr_4866 0.63 +2.9
5,775,820 + Psyr_4866 0.63 +0.0
5,775,820 + Psyr_4866 0.63 +1.1
5,775,820 + Psyr_4866 0.63 +0.5
5,775,821 - Psyr_4866 0.63 +0.6
5,775,821 - Psyr_4866 0.63 -0.7
5,775,821 - Psyr_4866 0.63 +1.4
5,775,821 - Psyr_4866 0.63 +1.1
5,775,821 - Psyr_4866 0.63 -0.1
5,775,821 - Psyr_4866 0.63 +0.8
5,775,821 - Psyr_4866 0.63 +0.9
5,775,821 - Psyr_4866 0.63 -0.3
5,775,821 - Psyr_4866 0.63 -0.3
5,775,821 - Psyr_4866 0.63 +0.1
5,775,821 - Psyr_4866 0.63 -1.8
5,775,821 - Psyr_4866 0.63 +0.4
5,775,821 - Psyr_4866 0.63 -0.5
5,775,821 - Psyr_4866 0.63 -0.0
5,775,922 + Psyr_4866 0.70 +0.3
5,775,923 - Psyr_4866 0.70 -0.2
5,775,923 - Psyr_4866 0.70 +0.5
5,776,069 + Psyr_4866 0.81 +0.1
5,776,069 + Psyr_4866 0.81 -1.4
5,776,069 + Psyr_4866 0.81 -1.1
5,776,069 + Psyr_4866 0.81 -1.3
5,776,070 - Psyr_4866 0.81 -0.2
5,776,070 - Psyr_4866 0.81 -0.6
5,776,070 - Psyr_4866 0.81 +0.2
5,776,070 - Psyr_4866 0.81 +0.6
5,776,070 - Psyr_4866 0.81 -0.2
5,776,070 - Psyr_4866 0.81 +1.4
5,776,195 + +0.3
5,776,249 + -0.4
5,776,588 - Psyr_4867 0.14 -0.5
5,776,675 - Psyr_4867 0.21 -0.4
5,776,930 + Psyr_4867 0.39 -0.4
5,777,187 + Psyr_4867 0.58 +0.5
5,777,188 - Psyr_4867 0.58 -0.8
5,777,188 - Psyr_4867 0.58 -0.2
5,777,323 - Psyr_4867 0.68 -0.2
5,777,436 + Psyr_4867 0.77 +0.6
5,777,436 + Psyr_4867 0.77 +0.1
5,777,436 + Psyr_4867 0.77 -0.5
5,777,436 + Psyr_4867 0.77 +0.6
5,777,437 - Psyr_4867 0.77 -0.8
5,777,437 - Psyr_4867 0.77 -0.6
5,777,437 - Psyr_4867 0.77 -1.6
5,777,487 + Psyr_4867 0.80 +0.1
5,777,488 - Psyr_4867 0.81 -0.7
5,777,488 - Psyr_4867 0.81 -0.2
5,777,547 + Psyr_4867 0.85 +0.4
5,777,547 + Psyr_4867 0.85 -0.3
5,777,547 + Psyr_4867 0.85 -1.9
5,777,547 + Psyr_4867 0.85 -0.2
5,777,547 + Psyr_4867 0.85 +1.9
5,777,548 - Psyr_4867 0.85 -1.1
5,777,548 - Psyr_4867 0.85 -0.2
5,777,550 + Psyr_4867 0.85 +0.8
5,777,550 + Psyr_4867 0.85 +1.4
5,777,550 + Psyr_4867 0.85 -0.2
5,777,550 + Psyr_4867 0.85 +0.5
5,777,551 - Psyr_4867 0.85 -0.2
5,777,551 - Psyr_4867 0.85 -0.4
5,777,551 - Psyr_4867 0.85 -0.2
5,777,551 - Psyr_4867 0.85 -1.1
5,777,554 + Psyr_4867 0.85 +0.6
5,777,554 + Psyr_4867 0.85 -0.4
5,777,554 + Psyr_4867 0.85 +0.7
5,777,554 + Psyr_4867 0.85 +0.7
5,777,564 + Psyr_4867 0.86 -1.0
5,777,564 + Psyr_4867 0.86 +1.5
5,777,564 + Psyr_4867 0.86 +0.1
5,777,565 - Psyr_4867 0.86 -0.7
5,777,565 - Psyr_4867 0.86 -0.2
5,777,565 - Psyr_4867 0.86 -0.7
5,777,568 + Psyr_4867 0.86 +0.9
5,777,568 + Psyr_4867 0.86 -0.3
5,777,568 + Psyr_4867 0.86 -0.6
5,777,568 + Psyr_4867 0.86 +1.1
5,777,569 - Psyr_4867 0.86 +0.1
5,777,569 - Psyr_4867 0.86 +0.2
5,777,569 - Psyr_4867 0.86 -0.3
5,777,569 - Psyr_4867 0.86 +0.5
5,777,747 - -0.9
5,777,752 + +1.2
5,777,752 + +0.2
5,777,752 + +0.6
5,777,752 + -0.5
5,777,752 + +0.2
5,777,753 - +0.4
5,777,753 - -1.6
5,777,753 - -1.2
5,777,753 - +1.0
5,777,756 + +0.5
5,777,756 + -0.8
5,777,756 + -0.3
5,777,756 + +0.2
5,777,757 - -0.1
5,777,757 - +0.8
5,777,757 - +0.5
5,777,757 - +0.6
5,777,757 - -0.8
5,777,757 - -1.3
5,777,757 - -0.5
5,777,757 - +1.2
5,777,769 + -1.8
5,777,770 - +0.2
5,777,770 - +0.0
5,777,770 - -0.8
5,777,818 + +0.9
5,777,818 + -0.7
5,777,818 + +0.1
5,777,818 + +0.2
5,777,818 + +0.1
5,777,819 - -0.3
5,777,819 - -2.0
5,777,819 - +0.0
5,777,819 - -1.4
5,777,819 - -0.1
5,777,850 + +0.7
5,777,911 + +0.3
5,777,911 + -0.2
5,777,911 + +0.6
5,777,918 - +0.2
5,778,027 + +0.3
5,778,027 + +0.3
5,778,094 - +0.6
5,778,155 + -0.3
5,778,233 + +2.0
5,778,247 - -0.1
5,778,264 + -0.3
5,778,265 - +0.9
5,778,419 + +0.9
5,778,419 + -2.2
5,778,419 + -0.9
5,778,420 - -1.0
5,778,420 - +0.5
5,778,442 + -1.3
5,778,442 + -0.7
5,778,442 + -0.7
5,778,443 - +1.9
5,778,443 - +1.1
5,778,443 - -0.7
5,778,443 - +0.8
5,778,490 + Psyr_4868 0.10 +0.1
5,778,498 - Psyr_4868 0.11 -0.8
5,778,528 + Psyr_4868 0.13 -0.8
5,778,528 + Psyr_4868 0.13 -0.9
5,778,529 - Psyr_4868 0.13 -0.3
5,778,529 - Psyr_4868 0.13 +0.9
5,778,529 - Psyr_4868 0.13 +0.3
5,778,542 - Psyr_4868 0.14 -0.1
5,778,723 + Psyr_4868 0.27 -2.1
5,778,723 + Psyr_4868 0.27 +1.8
5,778,723 + Psyr_4868 0.27 +0.2
5,778,723 + Psyr_4868 0.27 +0.6
5,778,723 + Psyr_4868 0.27 -0.2
5,778,724 - Psyr_4868 0.27 +0.3

Or see this region's nucleotide sequence