Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3072

Experiment: KB with Methanol 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Methanol 5 vol%
3,670,589	+		Psyr_3071	0.26	+1.0
3,670,589	+		Psyr_3071	0.26	-0.1
3,670,590	-		Psyr_3071	0.26	+0.5
3,670,836	+		Psyr_3071	0.47	+2.6
3,670,836	+		Psyr_3071	0.47	+0.6
3,670,836	+		Psyr_3071	0.47	+0.8
3,670,836	+		Psyr_3071	0.47	-1.0
3,670,837	-		Psyr_3071	0.47	+0.0
3,670,837	-		Psyr_3071	0.47	-0.5
3,670,837	-		Psyr_3071	0.47	+0.6
3,670,837	-		Psyr_3071	0.47	+0.3
3,670,837	-		Psyr_3071	0.47	+0.3
3,670,895	+		Psyr_3071	0.52	-0.3
3,671,052	-		Psyr_3071	0.65	+0.0
3,671,125	+		Psyr_3071	0.71	-1.0
3,671,125	+		Psyr_3071	0.71	-1.2
3,671,126	-		Psyr_3071	0.71	+0.1
3,671,126	-		Psyr_3071	0.71	-0.1
3,671,135	+		Psyr_3071	0.72	+1.6
3,671,178	-		Psyr_3071	0.75	-1.4
3,671,338	+		Psyr_3071	0.89	+0.4
3,671,338	+		Psyr_3071	0.89	-0.1
3,671,338	+		Psyr_3071	0.89	-0.6
3,671,338	+		Psyr_3071	0.89	+1.1
3,671,338	+		Psyr_3071	0.89	+1.2
3,671,338	+		Psyr_3071	0.89	+0.5
3,671,338	+		Psyr_3071	0.89	-0.8
3,671,339	-		Psyr_3071	0.89	+1.0
3,671,339	-		Psyr_3071	0.89	+0.9
3,671,339	-		Psyr_3071	0.89	-0.0
3,671,339	-		Psyr_3071	0.89	-0.1
3,671,339	-		Psyr_3071	0.89	+0.0
3,671,339	-		Psyr_3071	0.89	-0.8
3,671,339	-		Psyr_3071	0.89	-0.9
3,671,339	-		Psyr_3071	0.89	+1.5
3,671,339	-		Psyr_3071	0.89	+0.1
3,671,440	+				-2.2
3,671,440	+				-0.1
3,671,440	+				+0.5
3,671,440	+				-0.2
3,671,440	+				+0.3
3,671,440	+				+1.0
3,671,441	-				+0.6
3,671,441	-				-0.1
3,671,441	-				+0.4
3,671,441	-				+2.1
3,671,441	-				-0.6
3,671,560	+				+0.6
3,671,560	+				+0.8
3,671,560	+				-0.6
3,671,560	+				+0.5
3,671,561	-				-0.0
3,671,561	-				-1.4
3,671,639	-		Psyr_3072	0.17	+0.3
3,671,650	+		Psyr_3072	0.18	-0.4
3,671,650	+		Psyr_3072	0.18	-1.6
3,671,650	+		Psyr_3072	0.18	-0.0
3,671,651	-		Psyr_3072	0.18	+0.8
3,671,651	-		Psyr_3072	0.18	-0.1
3,671,690	+		Psyr_3072	0.22	+0.5
3,671,690	+		Psyr_3072	0.22	+0.5
3,671,690	+		Psyr_3072	0.22	+0.1
3,671,792	+		Psyr_3072	0.32	+1.1
3,671,792	+		Psyr_3072	0.32	-0.4
3,671,832	+		Psyr_3072	0.36	+2.3
3,671,832	+		Psyr_3072	0.36	+0.3
3,671,833	-		Psyr_3072	0.36	+0.9
3,671,833	-		Psyr_3072	0.36	+0.2
3,671,833	-		Psyr_3072	0.36	-0.8
3,671,833	-		Psyr_3072	0.36	+0.8
3,671,848	+		Psyr_3072	0.37	+3.0
3,671,848	+		Psyr_3072	0.37	-0.4
3,671,849	-		Psyr_3072	0.37	-1.1
3,671,849	-		Psyr_3072	0.37	-0.4
3,671,849	-		Psyr_3072	0.37	+2.2
3,671,849	-		Psyr_3072	0.37	+1.2
3,671,865	+		Psyr_3072	0.39	+0.3
3,671,865	+		Psyr_3072	0.39	-0.2
3,671,866	-		Psyr_3072	0.39	-0.3
3,671,866	-		Psyr_3072	0.39	+0.9
3,671,866	-		Psyr_3072	0.39	+1.9
3,671,866	-		Psyr_3072	0.39	-1.0
3,671,907	-		Psyr_3072	0.43	+0.1
3,671,967	+		Psyr_3072	0.49	+0.6
3,671,984	+		Psyr_3072	0.50	-1.7
3,671,985	-		Psyr_3072	0.50	-0.4
3,672,306	+		Psyr_3072	0.82	-1.4
3,672,306	+		Psyr_3072	0.82	-0.4
3,672,306	+		Psyr_3072	0.82	+1.0
3,672,307	-		Psyr_3072	0.82	-0.6
3,672,307	-		Psyr_3072	0.82	+1.8
3,672,467	+				-1.4
3,672,565	+				+0.3
3,672,566	-				-0.3
3,672,566	-				+0.3
3,672,566	-				-1.3
3,672,566	-				-2.1
3,672,566	-				+0.1
3,672,588	+				-2.0
3,672,588	+				-1.9
3,672,588	+				-0.1
3,672,589	-				-0.5
3,672,795	+				-2.3
3,672,795	+				-2.4
3,672,795	+				-1.5
3,672,795	+				-1.0
3,672,795	+				-3.0
3,672,795	+				+2.2
3,672,795	+				-1.0
3,672,795	+				-1.3
3,672,796	-				-0.5
3,672,796	-				-0.7
3,672,796	-				+1.5
3,672,796	-				+1.2
3,672,796	-				-1.2
3,672,796	-				-0.4
3,672,912	-		Psyr_3073	0.15	-1.2
3,673,078	-		Psyr_3073	0.33	-1.7
3,673,187	+		Psyr_3073	0.45	-3.1
3,673,188	-		Psyr_3073	0.46	-1.6
3,673,189	+		Psyr_3073	0.46	+0.6
3,673,189	+		Psyr_3073	0.46	-1.9
3,673,189	+		Psyr_3073	0.46	-0.5
3,673,190	-		Psyr_3073	0.46	-1.3
3,673,190	-		Psyr_3073	0.46	+0.6
3,673,190	-		Psyr_3073	0.46	+0.2
3,673,190	-		Psyr_3073	0.46	+0.3
3,673,190	-		Psyr_3073	0.46	+1.3
3,673,190	-		Psyr_3073	0.46	-1.5
3,673,449	+		Psyr_3073	0.74	-2.7
3,673,450	-		Psyr_3073	0.74	-0.1
3,673,478	+		Psyr_3073	0.77	+0.3
3,673,478	+		Psyr_3073	0.77	-0.3
3,673,478	+		Psyr_3073	0.77	+0.4
3,673,478	+		Psyr_3073	0.77	-0.0
3,673,479	-		Psyr_3073	0.77	-0.7
3,673,479	-		Psyr_3073	0.77	-0.6
3,673,479	-		Psyr_3073	0.77	+0.6