Experiment: KB with Methanol 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1607 and Psyr_1608 are separated by 459 nucleotides Psyr_1608 and Psyr_1609 are separated by 251 nucleotides
Psyr_1607: Psyr_1607 - transcriptional regulator, GntR family, at 1,806,453 to 1,807,214
_1607
Psyr_1608: Psyr_1608 - ice-nucleation proteins octamer repeat protein, at 1,807,674 to 1,811,720
_1608
Psyr_1609: Psyr_1609 - Aspartyl aminopeptidase, at 1,811,972 to 1,813,261
_1609
Position (kb) 1807
1808
1809
1810
1811
1812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1806.679 kb on - strand, within Psyr_1607 at 1806.726 kb on + strand, within Psyr_1607 at 1806.726 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1807.126 kb on - strand, within Psyr_1607 at 1807.181 kb on + strand at 1807.182 kb on - strand at 1807.182 kb on - strand at 1807.222 kb on + strand at 1807.223 kb on - strand at 1807.227 kb on - strand at 1807.278 kb on - strand at 1807.283 kb on + strand at 1807.283 kb on + strand at 1807.283 kb on + strand at 1807.284 kb on - strand at 1807.284 kb on - strand at 1807.363 kb on - strand at 1807.363 kb on - strand at 1807.419 kb on - strand at 1807.499 kb on - strand at 1807.616 kb on - strand at 1807.630 kb on + strand at 1807.650 kb on + strand at 1807.659 kb on + strand at 1807.660 kb on - strand at 1807.672 kb on + strand at 1807.703 kb on + strand at 1807.704 kb on - strand at 1807.716 kb on - strand at 1807.739 kb on + strand at 1807.739 kb on + strand at 1807.739 kb on + strand at 1807.739 kb on + strand at 1807.739 kb on + strand at 1807.739 kb on + strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.741 kb on + strand at 1807.741 kb on + strand at 1807.741 kb on + strand at 1807.741 kb on + strand at 1807.742 kb on - strand at 1807.816 kb on + strand at 1807.816 kb on + strand at 1808.077 kb on + strand at 1808.078 kb on - strand at 1808.171 kb on - strand, within Psyr_1608 at 1808.321 kb on + strand, within Psyr_1608 at 1808.321 kb on + strand, within Psyr_1608 at 1808.322 kb on - strand, within Psyr_1608 at 1808.322 kb on - strand, within Psyr_1608 at 1808.657 kb on + strand, within Psyr_1608 at 1808.730 kb on - strand, within Psyr_1608 at 1809.186 kb on - strand, within Psyr_1608 at 1809.335 kb on + strand, within Psyr_1608 at 1809.426 kb on - strand, within Psyr_1608 at 1809.883 kb on + strand, within Psyr_1608 at 1809.883 kb on + strand, within Psyr_1608 at 1809.883 kb on + strand, within Psyr_1608 at 1809.884 kb on - strand, within Psyr_1608 at 1809.884 kb on - strand, within Psyr_1608 at 1809.884 kb on - strand, within Psyr_1608 at 1809.884 kb on - strand, within Psyr_1608 at 1809.884 kb on - strand, within Psyr_1608 at 1809.884 kb on - strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.906 kb on - strand, within Psyr_1608 at 1810.002 kb on - strand, within Psyr_1608 at 1810.025 kb on + strand, within Psyr_1608 at 1810.025 kb on + strand, within Psyr_1608 at 1810.098 kb on - strand, within Psyr_1608 at 1810.098 kb on - strand, within Psyr_1608 at 1810.098 kb on - strand, within Psyr_1608 at 1810.098 kb on - strand, within Psyr_1608 at 1810.138 kb on - strand, within Psyr_1608 at 1810.193 kb on + strand, within Psyr_1608 at 1810.315 kb on + strand, within Psyr_1608 at 1810.316 kb on - strand, within Psyr_1608 at 1810.316 kb on - strand, within Psyr_1608 at 1810.316 kb on - strand, within Psyr_1608 at 1810.529 kb on + strand, within Psyr_1608 at 1810.529 kb on + strand, within Psyr_1608 at 1810.529 kb on + strand, within Psyr_1608 at 1810.529 kb on + strand, within Psyr_1608 at 1810.529 kb on + strand, within Psyr_1608 at 1810.530 kb on - strand, within Psyr_1608 at 1810.530 kb on - strand, within Psyr_1608 at 1810.578 kb on - strand, within Psyr_1608 at 1810.673 kb on + strand, within Psyr_1608 at 1810.673 kb on + strand, within Psyr_1608 at 1810.673 kb on + strand, within Psyr_1608 at 1810.674 kb on - strand, within Psyr_1608 at 1810.674 kb on - strand, within Psyr_1608 at 1810.674 kb on - strand, within Psyr_1608 at 1810.713 kb on + strand, within Psyr_1608 at 1810.738 kb on - strand, within Psyr_1608 at 1810.738 kb on - strand, within Psyr_1608 at 1810.914 kb on - strand, within Psyr_1608 at 1811.049 kb on + strand, within Psyr_1608 at 1811.057 kb on + strand, within Psyr_1608 at 1811.058 kb on - strand, within Psyr_1608 at 1811.105 kb on + strand, within Psyr_1608 at 1811.111 kb on + strand, within Psyr_1608 at 1811.111 kb on + strand, within Psyr_1608 at 1811.111 kb on + strand, within Psyr_1608 at 1811.111 kb on + strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.299 kb on + strand, within Psyr_1608 at 1811.299 kb on + strand, within Psyr_1608 at 1811.299 kb on + strand, within Psyr_1608 at 1811.299 kb on + strand, within Psyr_1608 at 1811.299 kb on + strand, within Psyr_1608 at 1811.300 kb on - strand, within Psyr_1608 at 1811.300 kb on - strand, within Psyr_1608 at 1811.300 kb on - strand, within Psyr_1608 at 1811.346 kb on - strand at 1811.375 kb on - strand at 1811.394 kb on + strand at 1811.394 kb on + strand at 1811.394 kb on + strand at 1811.394 kb on + strand at 1811.394 kb on + strand at 1811.394 kb on + strand at 1811.395 kb on - strand at 1811.395 kb on - strand at 1811.412 kb on - strand at 1811.489 kb on + strand at 1811.490 kb on - strand at 1811.595 kb on + strand at 1811.596 kb on - strand at 1811.642 kb on + strand at 1811.644 kb on + strand at 1811.644 kb on + strand at 1811.644 kb on + strand at 1811.645 kb on - strand at 1811.645 kb on - strand at 1811.645 kb on - strand at 1811.645 kb on - strand at 1811.649 kb on + strand at 1811.650 kb on - strand at 1811.653 kb on - strand at 1811.653 kb on - strand at 1811.713 kb on + strand at 1811.713 kb on + strand at 1811.713 kb on + strand at 1811.729 kb on - strand at 1811.826 kb on + strand at 1811.862 kb on + strand at 1811.994 kb on + strand at 1811.995 kb on - strand at 1811.995 kb on - strand at 1811.995 kb on - strand at 1811.995 kb on - strand at 1812.008 kb on + strand at 1812.009 kb on - strand at 1812.086 kb on - strand at 1812.089 kb on + strand at 1812.315 kb on + strand, within Psyr_1609 at 1812.315 kb on + strand, within Psyr_1609 at 1812.316 kb on - strand, within Psyr_1609 at 1812.316 kb on - strand, within Psyr_1609 at 1812.316 kb on - strand, within Psyr_1609 at 1812.381 kb on + strand, within Psyr_1609 at 1812.381 kb on + strand, within Psyr_1609 at 1812.381 kb on + strand, within Psyr_1609 at 1812.382 kb on - strand, within Psyr_1609 at 1812.382 kb on - strand, within Psyr_1609 at 1812.382 kb on - strand, within Psyr_1609 at 1812.382 kb on - strand, within Psyr_1609 at 1812.618 kb on + strand, within Psyr_1609 at 1812.619 kb on - strand, within Psyr_1609
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Methanol 5 vol% remove 1,806,679 - Psyr_1607 0.30 +0.5 1,806,726 + Psyr_1607 0.36 +0.9 1,806,726 + Psyr_1607 0.36 +0.1 1,806,915 + Psyr_1607 0.61 +0.2 1,806,915 + Psyr_1607 0.61 -2.1 1,806,915 + Psyr_1607 0.61 -1.3 1,806,915 + Psyr_1607 0.61 -0.5 1,806,915 + Psyr_1607 0.61 +0.5 1,806,915 + Psyr_1607 0.61 +0.3 1,806,916 - Psyr_1607 0.61 -0.1 1,806,916 - Psyr_1607 0.61 -1.3 1,807,126 - Psyr_1607 0.88 -1.6 1,807,181 + -1.8 1,807,182 - +0.4 1,807,182 - +0.4 1,807,222 + -0.0 1,807,223 - +0.6 1,807,227 - +1.9 1,807,278 - +0.4 1,807,283 + -2.0 1,807,283 + +1.9 1,807,283 + -1.5 1,807,284 - +0.1 1,807,284 - -1.3 1,807,363 - -0.7 1,807,363 - -0.1 1,807,419 - -1.1 1,807,499 - -2.2 1,807,616 - -1.5 1,807,630 + +1.5 1,807,650 + -0.7 1,807,659 + +0.6 1,807,660 - -3.4 1,807,672 + +0.0 1,807,703 + -1.3 1,807,704 - -1.4 1,807,716 - +0.4 1,807,739 + +0.8 1,807,739 + -0.4 1,807,739 + -0.5 1,807,739 + +0.3 1,807,739 + +1.8 1,807,739 + +0.7 1,807,740 - -1.8 1,807,740 - -0.2 1,807,740 - +0.7 1,807,740 - -0.4 1,807,740 - +0.7 1,807,740 - -1.1 1,807,740 - -2.3 1,807,741 + -0.2 1,807,741 + -1.1 1,807,741 + -0.1 1,807,741 + -0.2 1,807,742 - -2.2 1,807,816 + -0.5 1,807,816 + -0.1 1,808,077 + -1.0 1,808,078 - -0.7 1,808,171 - Psyr_1608 0.12 +0.3 1,808,321 + Psyr_1608 0.16 +2.2 1,808,321 + Psyr_1608 0.16 +0.2 1,808,322 - Psyr_1608 0.16 -0.7 1,808,322 - Psyr_1608 0.16 +1.7 1,808,657 + Psyr_1608 0.24 +1.0 1,808,730 - Psyr_1608 0.26 -0.7 1,809,186 - Psyr_1608 0.37 -0.2 1,809,335 + Psyr_1608 0.41 +0.1 1,809,426 - Psyr_1608 0.43 -0.6 1,809,883 + Psyr_1608 0.55 +0.4 1,809,883 + Psyr_1608 0.55 -0.9 1,809,883 + Psyr_1608 0.55 +0.3 1,809,884 - Psyr_1608 0.55 +0.7 1,809,884 - Psyr_1608 0.55 -0.1 1,809,884 - Psyr_1608 0.55 +0.1 1,809,884 - Psyr_1608 0.55 +0.3 1,809,884 - Psyr_1608 0.55 -2.3 1,809,884 - Psyr_1608 0.55 +0.3 1,809,887 + Psyr_1608 0.55 +0.4 1,809,887 + Psyr_1608 0.55 +0.5 1,809,887 + Psyr_1608 0.55 +0.4 1,809,887 + Psyr_1608 0.55 -0.2 1,809,887 + Psyr_1608 0.55 +0.6 1,809,887 + Psyr_1608 0.55 -1.4 1,809,887 + Psyr_1608 0.55 -0.4 1,809,887 + Psyr_1608 0.55 -0.5 1,809,887 + Psyr_1608 0.55 -0.0 1,809,888 - Psyr_1608 0.55 -0.0 1,809,888 - Psyr_1608 0.55 -0.7 1,809,888 - Psyr_1608 0.55 +0.4 1,809,888 - Psyr_1608 0.55 -0.4 1,809,888 - Psyr_1608 0.55 -0.4 1,809,888 - Psyr_1608 0.55 +0.1 1,809,888 - Psyr_1608 0.55 +1.0 1,809,888 - Psyr_1608 0.55 +0.2 1,809,888 - Psyr_1608 0.55 +0.3 1,809,888 - Psyr_1608 0.55 -1.4 1,809,888 - Psyr_1608 0.55 -1.8 1,809,906 - Psyr_1608 0.55 -0.4 1,810,002 - Psyr_1608 0.58 -0.1 1,810,025 + Psyr_1608 0.58 -1.4 1,810,025 + Psyr_1608 0.58 -0.4 1,810,098 - Psyr_1608 0.60 +0.2 1,810,098 - Psyr_1608 0.60 -0.9 1,810,098 - Psyr_1608 0.60 +0.0 1,810,098 - Psyr_1608 0.60 +0.1 1,810,138 - Psyr_1608 0.61 -0.3 1,810,193 + Psyr_1608 0.62 -0.7 1,810,315 + Psyr_1608 0.65 -2.7 1,810,316 - Psyr_1608 0.65 +2.6 1,810,316 - Psyr_1608 0.65 -0.2 1,810,316 - Psyr_1608 0.65 -0.6 1,810,529 + Psyr_1608 0.71 -0.0 1,810,529 + Psyr_1608 0.71 -0.5 1,810,529 + Psyr_1608 0.71 +2.7 1,810,529 + Psyr_1608 0.71 +1.5 1,810,529 + Psyr_1608 0.71 +1.4 1,810,530 - Psyr_1608 0.71 +0.6 1,810,530 - Psyr_1608 0.71 +1.0 1,810,578 - Psyr_1608 0.72 +1.4 1,810,673 + Psyr_1608 0.74 +0.3 1,810,673 + Psyr_1608 0.74 +0.3 1,810,673 + Psyr_1608 0.74 +0.2 1,810,674 - Psyr_1608 0.74 -1.2 1,810,674 - Psyr_1608 0.74 +0.7 1,810,674 - Psyr_1608 0.74 -0.1 1,810,713 + Psyr_1608 0.75 -0.7 1,810,738 - Psyr_1608 0.76 +0.3 1,810,738 - Psyr_1608 0.76 +0.5 1,810,914 - Psyr_1608 0.80 +0.6 1,811,049 + Psyr_1608 0.83 +0.1 1,811,057 + Psyr_1608 0.84 +0.3 1,811,058 - Psyr_1608 0.84 +1.1 1,811,105 + Psyr_1608 0.85 -1.1 1,811,111 + Psyr_1608 0.85 +1.3 1,811,111 + Psyr_1608 0.85 +1.4 1,811,111 + Psyr_1608 0.85 +0.1 1,811,111 + Psyr_1608 0.85 -1.1 1,811,112 - Psyr_1608 0.85 -1.5 1,811,112 - Psyr_1608 0.85 +0.0 1,811,112 - Psyr_1608 0.85 -0.2 1,811,299 + Psyr_1608 0.90 -0.7 1,811,299 + Psyr_1608 0.90 -0.4 1,811,299 + Psyr_1608 0.90 -0.7 1,811,299 + Psyr_1608 0.90 -0.6 1,811,299 + Psyr_1608 0.90 -0.4 1,811,300 - Psyr_1608 0.90 -0.5 1,811,300 - Psyr_1608 0.90 +0.6 1,811,300 - Psyr_1608 0.90 -1.0 1,811,346 - -0.0 1,811,375 - -0.7 1,811,394 + +1.2 1,811,394 + +1.3 1,811,394 + +0.3 1,811,394 + +0.1 1,811,394 + +0.2 1,811,394 + +0.1 1,811,395 - -1.3 1,811,395 - -0.3 1,811,412 - +0.5 1,811,489 + -0.1 1,811,490 - +0.7 1,811,595 + +0.6 1,811,596 - +0.8 1,811,642 + +0.3 1,811,644 + +0.8 1,811,644 + +0.3 1,811,644 + +0.1 1,811,645 - +0.0 1,811,645 - -0.0 1,811,645 - +0.1 1,811,645 - +0.7 1,811,649 + -0.3 1,811,650 - -0.6 1,811,653 - +0.6 1,811,653 - -0.3 1,811,713 + -0.5 1,811,713 + -0.2 1,811,713 + +2.3 1,811,729 - -2.5 1,811,826 + +0.3 1,811,862 + +1.2 1,811,994 + +0.3 1,811,995 - -1.6 1,811,995 - -0.5 1,811,995 - -0.3 1,811,995 - -2.2 1,812,008 + +0.5 1,812,009 - -0.0 1,812,086 - -0.8 1,812,089 + +0.5 1,812,315 + Psyr_1609 0.27 +0.1 1,812,315 + Psyr_1609 0.27 -1.5 1,812,316 - Psyr_1609 0.27 +0.4 1,812,316 - Psyr_1609 0.27 -0.9 1,812,316 - Psyr_1609 0.27 -0.7 1,812,381 + Psyr_1609 0.32 -0.6 1,812,381 + Psyr_1609 0.32 -0.4 1,812,381 + Psyr_1609 0.32 +0.2 1,812,382 - Psyr_1609 0.32 +0.1 1,812,382 - Psyr_1609 0.32 +0.1 1,812,382 - Psyr_1609 0.32 -0.6 1,812,382 - Psyr_1609 0.32 +0.5 1,812,618 + Psyr_1609 0.50 -0.9 1,812,619 - Psyr_1609 0.50 +1.7
Or see this region's nucleotide sequence