Experiment: 3-hydroxypentanoate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4935 and PP_4936 are separated by 15 nucleotides PP_4936 and PP_4937 are separated by 100 nucleotides PP_4937 and PP_4938 are separated by 3 nucleotides
PP_4935: PP_4935 - Lipid A export ATP-binding/permease protein MsbA, at 5,615,652 to 5,617,460
_4935
PP_4936: PP_4936 - O-antigen polymerase, at 5,617,476 to 5,618,651
_4936
PP_4937: PP_4937 - toluene tolerance protein, at 5,618,752 to 5,619,357
_4937
PP_4938: PP_4938 - putative Glycosyl transferase, at 5,619,361 to 5,620,500
_4938
Position (kb) 5617
5618
5619 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5617.586 kb on + strand at 5617.810 kb on + strand, within PP_4936 at 5617.810 kb on + strand, within PP_4936 at 5617.918 kb on + strand, within PP_4936 at 5617.919 kb on - strand, within PP_4936 at 5617.919 kb on - strand, within PP_4936 at 5618.015 kb on + strand, within PP_4936 at 5618.016 kb on - strand, within PP_4936 at 5618.129 kb on - strand, within PP_4936 at 5618.161 kb on + strand, within PP_4936 at 5618.161 kb on + strand, within PP_4936 at 5618.161 kb on + strand, within PP_4936 at 5618.161 kb on + strand, within PP_4936 at 5618.161 kb on + strand, within PP_4936 at 5618.162 kb on - strand, within PP_4936 at 5618.162 kb on - strand, within PP_4936 at 5618.162 kb on - strand, within PP_4936 at 5618.162 kb on - strand, within PP_4936 at 5618.162 kb on - strand, within PP_4936 at 5618.162 kb on - strand, within PP_4936 at 5618.184 kb on + strand, within PP_4936 at 5618.295 kb on + strand, within PP_4936 at 5618.295 kb on + strand, within PP_4936 at 5618.296 kb on - strand, within PP_4936 at 5618.363 kb on - strand, within PP_4936 at 5618.363 kb on - strand, within PP_4936 at 5618.363 kb on - strand, within PP_4936 at 5618.514 kb on + strand, within PP_4936 at 5618.515 kb on - strand, within PP_4936 at 5618.616 kb on + strand at 5618.617 kb on - strand at 5618.644 kb on + strand at 5618.645 kb on - strand at 5618.690 kb on + strand at 5618.690 kb on + strand at 5618.690 kb on + strand at 5618.691 kb on - strand at 5618.691 kb on - strand at 5618.698 kb on + strand at 5618.710 kb on + strand at 5618.711 kb on - strand at 5618.711 kb on - strand at 5618.747 kb on + strand at 5618.748 kb on - strand at 5618.748 kb on - strand at 5618.843 kb on - strand, within PP_4937 at 5618.909 kb on + strand, within PP_4937 at 5618.910 kb on - strand, within PP_4937 at 5618.917 kb on + strand, within PP_4937 at 5619.028 kb on + strand, within PP_4937 at 5619.028 kb on + strand, within PP_4937 at 5619.029 kb on - strand, within PP_4937 at 5619.094 kb on + strand, within PP_4937 at 5619.095 kb on - strand, within PP_4937 at 5619.095 kb on - strand, within PP_4937 at 5619.286 kb on + strand, within PP_4937 at 5619.287 kb on - strand, within PP_4937 at 5619.287 kb on - strand, within PP_4937 at 5619.287 kb on - strand, within PP_4937 at 5619.469 kb on - strand at 5619.469 kb on - strand at 5619.519 kb on - strand, within PP_4938 at 5619.577 kb on + strand, within PP_4938 at 5619.634 kb on + strand at 5619.635 kb on - strand, within PP_4938 at 5619.640 kb on + strand, within PP_4938 at 5619.641 kb on - strand, within PP_4938
Per-strain Table
Position Strand Gene LocusTag Fraction 3-hydroxypentanoate remove 5,617,586 + -0.1 5,617,810 + PP_4936 0.28 +1.5 5,617,810 + PP_4936 0.28 +0.7 5,617,918 + PP_4936 0.38 -0.2 5,617,919 - PP_4936 0.38 -1.6 5,617,919 - PP_4936 0.38 +1.5 5,618,015 + PP_4936 0.46 +0.6 5,618,016 - PP_4936 0.46 +1.5 5,618,129 - PP_4936 0.56 +0.7 5,618,161 + PP_4936 0.58 +0.3 5,618,161 + PP_4936 0.58 -0.1 5,618,161 + PP_4936 0.58 -0.2 5,618,161 + PP_4936 0.58 +0.8 5,618,161 + PP_4936 0.58 +2.5 5,618,162 - PP_4936 0.58 +1.3 5,618,162 - PP_4936 0.58 -0.6 5,618,162 - PP_4936 0.58 -0.3 5,618,162 - PP_4936 0.58 +0.3 5,618,162 - PP_4936 0.58 +1.0 5,618,162 - PP_4936 0.58 -0.8 5,618,184 + PP_4936 0.60 +0.4 5,618,295 + PP_4936 0.70 -0.1 5,618,295 + PP_4936 0.70 -0.5 5,618,296 - PP_4936 0.70 +0.0 5,618,363 - PP_4936 0.75 +1.0 5,618,363 - PP_4936 0.75 +0.1 5,618,363 - PP_4936 0.75 +0.6 5,618,514 + PP_4936 0.88 +1.9 5,618,515 - PP_4936 0.88 +1.4 5,618,616 + +0.2 5,618,617 - +0.3 5,618,644 + +1.3 5,618,645 - -0.3 5,618,690 + -0.5 5,618,690 + +0.4 5,618,690 + +0.2 5,618,691 - +0.2 5,618,691 - +0.3 5,618,698 + -0.1 5,618,710 + -0.1 5,618,711 - +0.4 5,618,711 - +1.5 5,618,747 + +0.4 5,618,748 - -0.5 5,618,748 - -0.5 5,618,843 - PP_4937 0.15 -0.7 5,618,909 + PP_4937 0.26 -0.4 5,618,910 - PP_4937 0.26 +0.6 5,618,917 + PP_4937 0.27 +0.1 5,619,028 + PP_4937 0.46 -0.4 5,619,028 + PP_4937 0.46 +0.2 5,619,029 - PP_4937 0.46 -2.3 5,619,094 + PP_4937 0.56 -0.9 5,619,095 - PP_4937 0.57 -1.5 5,619,095 - PP_4937 0.57 -0.6 5,619,286 + PP_4937 0.88 -0.6 5,619,287 - PP_4937 0.88 +0.6 5,619,287 - PP_4937 0.88 -0.6 5,619,287 - PP_4937 0.88 -0.7 5,619,469 - +0.6 5,619,469 - +0.8 5,619,519 - PP_4938 0.14 +0.2 5,619,577 + PP_4938 0.19 +0.3 5,619,634 + -0.8 5,619,635 - PP_4938 0.24 +0.1 5,619,640 + PP_4938 0.24 -0.2 5,619,641 - PP_4938 0.25 +0.4
Or see this region's nucleotide sequence