Strain Fitness in Pseudomonas putida KT2440 around PP_4267

Experiment: 3-hydroxypentanoate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4265 and PP_4266 are separated by 55 nucleotidesPP_4266 and PP_4267 are separated by 118 nucleotidesPP_4267 and PP_4268 are separated by 296 nucleotidesPP_4268 and PP_4269 are separated by 63 nucleotides PP_4265: PP_4265 - DNA-binding transcriptional dual regulator, at 4,850,270 to 4,851,004 _4265 PP_4266: PP_4266 - Adenine phosphoribosyltransferase, at 4,851,060 to 4,851,608 _4266 PP_4267: PP_4267 - Recombination protein RecR, at 4,851,727 to 4,852,329 _4267 PP_4268: PP_4268 - nucleoid-associated broad specificity regulator, at 4,852,626 to 4,852,961 _4268 PP_4269: PP_4269 - DNA polymerase III, gamma subunit, at 4,853,025 to 4,855,100 _4269 Position (kb) 4851 4852 4853Strain fitness (log2 ratio) -2 -1 0 1 2at 4850.861 kb on + strand, within PP_4265at 4850.861 kb on + strand, within PP_4265at 4850.861 kb on + strand, within PP_4265at 4850.862 kb on - strand, within PP_4265at 4850.877 kb on + strand, within PP_4265at 4851.015 kb on + strandat 4851.024 kb on + strandat 4851.024 kb on + strandat 4851.024 kb on + strandat 4851.025 kb on - strandat 4851.025 kb on - strandat 4851.143 kb on + strand, within PP_4266at 4851.177 kb on + strand, within PP_4266at 4851.178 kb on - strand, within PP_4266at 4851.178 kb on - strand, within PP_4266at 4851.349 kb on - strand, within PP_4266at 4851.440 kb on + strand, within PP_4266at 4851.440 kb on + strand, within PP_4266at 4851.449 kb on + strand, within PP_4266at 4851.450 kb on - strand, within PP_4266at 4851.569 kb on + strandat 4851.569 kb on + strandat 4851.570 kb on - strandat 4851.570 kb on - strandat 4851.570 kb on - strandat 4851.570 kb on - strandat 4851.604 kb on - strandat 4851.604 kb on - strandat 4851.659 kb on - strandat 4851.867 kb on - strand, within PP_4267at 4851.867 kb on - strand, within PP_4267at 4851.867 kb on - strand, within PP_4267at 4852.055 kb on + strand, within PP_4267at 4852.055 kb on + strand, within PP_4267at 4852.055 kb on + strand, within PP_4267at 4852.055 kb on + strand, within PP_4267at 4852.055 kb on + strand, within PP_4267at 4852.055 kb on + strand, within PP_4267at 4852.056 kb on - strand, within PP_4267at 4852.056 kb on - strand, within PP_4267at 4852.351 kb on + strandat 4852.351 kb on + strandat 4852.364 kb on - strandat 4852.365 kb on + strandat 4852.627 kb on + strandat 4852.628 kb on - strandat 4852.628 kb on - strandat 4852.752 kb on + strand, within PP_4268at 4852.753 kb on - strand, within PP_4268at 4852.967 kb on - strandat 4852.967 kb on - strandat 4852.969 kb on - strandat 4852.969 kb on - strandat 4852.969 kb on - strandat 4853.027 kb on - strandat 4853.039 kb on + strandat 4853.040 kb on - strandat 4853.053 kb on - strandat 4853.063 kb on + strandat 4853.063 kb on + strandat 4853.063 kb on + strandat 4853.064 kb on - strandat 4853.064 kb on - strandat 4853.064 kb on - strandat 4853.064 kb on - strandat 4853.064 kb on - strandat 4853.064 kb on - strandat 4853.066 kb on + strandat 4853.067 kb on - strandat 4853.067 kb on - strandat 4853.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-hydroxypentanoate
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4,850,861 + PP_4265 0.80 +0.2
4,850,861 + PP_4265 0.80 -0.9
4,850,861 + PP_4265 0.80 +0.5
4,850,862 - PP_4265 0.81 +0.7
4,850,877 + PP_4265 0.83 -0.3
4,851,015 + +0.2
4,851,024 + +1.1
4,851,024 + -0.1
4,851,024 + +0.4
4,851,025 - +0.5
4,851,025 - +0.2
4,851,143 + PP_4266 0.15 -0.0
4,851,177 + PP_4266 0.21 -0.5
4,851,178 - PP_4266 0.21 +1.1
4,851,178 - PP_4266 0.21 -0.3
4,851,349 - PP_4266 0.53 +0.5
4,851,440 + PP_4266 0.69 -0.0
4,851,440 + PP_4266 0.69 +0.1
4,851,449 + PP_4266 0.71 +0.6
4,851,450 - PP_4266 0.71 +0.6
4,851,569 + -0.3
4,851,569 + +0.3
4,851,570 - -0.7
4,851,570 - -0.0
4,851,570 - -0.4
4,851,570 - -1.2
4,851,604 - +0.3
4,851,604 - -0.7
4,851,659 - -1.7
4,851,867 - PP_4267 0.23 -0.2
4,851,867 - PP_4267 0.23 -2.0
4,851,867 - PP_4267 0.23 -1.1
4,852,055 + PP_4267 0.54 -1.8
4,852,055 + PP_4267 0.54 -1.0
4,852,055 + PP_4267 0.54 -0.6
4,852,055 + PP_4267 0.54 -0.1
4,852,055 + PP_4267 0.54 -0.3
4,852,055 + PP_4267 0.54 -0.3
4,852,056 - PP_4267 0.55 -0.7
4,852,056 - PP_4267 0.55 +0.3
4,852,351 + +1.8
4,852,351 + -0.4
4,852,364 - -0.9
4,852,365 + -0.1
4,852,627 + -0.3
4,852,628 - -1.6
4,852,628 - +0.0
4,852,752 + PP_4268 0.38 -1.2
4,852,753 - PP_4268 0.38 -0.0
4,852,967 - +1.6
4,852,967 - -0.3
4,852,969 - +0.4
4,852,969 - -1.4
4,852,969 - +2.0
4,853,027 - +0.5
4,853,039 + -0.5
4,853,040 - +0.1
4,853,053 - -0.3
4,853,063 + +1.3
4,853,063 + +1.3
4,853,063 + +1.3
4,853,064 - -1.0
4,853,064 - -2.0
4,853,064 - -2.0
4,853,064 - -1.9
4,853,064 - -0.7
4,853,064 - +0.9
4,853,066 + -1.0
4,853,067 - +1.3
4,853,067 - -0.3
4,853,067 - -1.0

Or see this region's nucleotide sequence