Experiment: 3-hydroxypentanoate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0749 and PP_0750 are separated by 44 nucleotides PP_0750 and PP_0751 are separated by 176 nucleotides PP_0751 and PP_5456 are separated by 601 nucleotides PP_5456 and PP_0753 are separated by 145 nucleotides
PP_0749: PP_0749 - conserved exported protein of unknown function, at 867,073 to 867,543
_0749
PP_0750: PP_0750 - conserved protein of unknown function, at 867,588 to 867,902
_0750
PP_0751: PP_0751 - malate:quinone oxidoreductase, at 868,079 to 869,587
_0751
PP_5456: PP_5456 - conserved protein of unknown function, at 870,189 to 870,422
_5456
PP_0753: PP_0753 - putative Lipoprotein, at 870,568 to 871,152
_0753
Position (kb) 868
869
870 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 867.215 kb on - strand, within PP_0749 at 867.215 kb on - strand, within PP_0749 at 867.227 kb on + strand, within PP_0749 at 867.382 kb on + strand, within PP_0749 at 867.382 kb on + strand, within PP_0749 at 867.382 kb on + strand, within PP_0749 at 867.382 kb on + strand, within PP_0749 at 867.382 kb on + strand, within PP_0749 at 867.383 kb on - strand, within PP_0749 at 867.383 kb on - strand, within PP_0749 at 867.383 kb on - strand, within PP_0749 at 867.383 kb on - strand, within PP_0749 at 867.431 kb on - strand, within PP_0749 at 867.534 kb on + strand at 867.534 kb on + strand at 867.535 kb on - strand at 867.535 kb on - strand at 867.535 kb on - strand at 867.535 kb on - strand at 867.617 kb on + strand at 867.617 kb on + strand at 867.634 kb on + strand, within PP_0750 at 867.660 kb on + strand, within PP_0750 at 867.660 kb on + strand at 867.660 kb on + strand, within PP_0750 at 867.661 kb on - strand, within PP_0750 at 867.661 kb on - strand, within PP_0750 at 867.736 kb on - strand, within PP_0750 at 867.773 kb on - strand, within PP_0750 at 867.773 kb on - strand, within PP_0750 at 867.871 kb on - strand at 867.871 kb on - strand at 867.871 kb on - strand at 867.871 kb on - strand at 867.887 kb on + strand at 867.887 kb on + strand at 867.888 kb on - strand at 867.888 kb on - strand at 868.014 kb on + strand at 868.080 kb on + strand at 868.080 kb on + strand at 868.087 kb on - strand at 869.608 kb on - strand at 869.608 kb on - strand at 869.618 kb on - strand at 869.618 kb on - strand at 869.618 kb on - strand at 869.618 kb on - strand at 869.618 kb on - strand at 869.618 kb on - strand at 869.630 kb on - strand at 869.630 kb on - strand at 869.630 kb on - strand at 869.630 kb on - strand at 869.630 kb on - strand at 869.630 kb on - strand at 869.630 kb on - strand at 869.758 kb on - strand at 869.805 kb on - strand at 870.117 kb on - strand at 870.117 kb on - strand at 870.119 kb on - strand at 870.134 kb on - strand at 870.134 kb on - strand at 870.136 kb on - strand at 870.136 kb on - strand at 870.136 kb on - strand at 870.136 kb on - strand at 870.176 kb on - strand at 870.374 kb on - strand, within PP_5456 at 870.374 kb on - strand, within PP_5456 at 870.461 kb on - strand at 870.524 kb on + strand at 870.524 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.530 kb on + strand at 870.530 kb on + strand at 870.530 kb on + strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-hydroxypentanoate remove 867,215 - PP_0749 0.30 -0.7 867,215 - PP_0749 0.30 +0.0 867,227 + PP_0749 0.33 -0.6 867,382 + PP_0749 0.66 -1.8 867,382 + PP_0749 0.66 -0.7 867,382 + PP_0749 0.66 -1.1 867,382 + PP_0749 0.66 +0.4 867,382 + PP_0749 0.66 -0.7 867,383 - PP_0749 0.66 -0.3 867,383 - PP_0749 0.66 +0.4 867,383 - PP_0749 0.66 -0.0 867,383 - PP_0749 0.66 +0.2 867,431 - PP_0749 0.76 +1.0 867,534 + +0.3 867,534 + +0.1 867,535 - -0.1 867,535 - -0.2 867,535 - -1.0 867,535 - +0.2 867,617 + +0.4 867,617 + +0.3 867,634 + PP_0750 0.15 +0.1 867,660 + PP_0750 0.23 +0.2 867,660 + +0.1 867,660 + PP_0750 0.23 +0.1 867,661 - PP_0750 0.23 +0.1 867,661 - PP_0750 0.23 -0.5 867,736 - PP_0750 0.47 -0.2 867,773 - PP_0750 0.59 -0.3 867,773 - PP_0750 0.59 -0.7 867,871 - +0.3 867,871 - +0.2 867,871 - +0.2 867,871 - -0.8 867,887 + -0.2 867,887 + +0.4 867,888 - +0.4 867,888 - +0.2 868,014 + -0.3 868,080 + -0.3 868,080 + -0.0 868,087 - +1.0 869,608 - +0.9 869,608 - -0.4 869,618 - -0.2 869,618 - -0.0 869,618 - +0.1 869,618 - -0.2 869,618 - -0.0 869,618 - +0.6 869,630 - -0.0 869,630 - -0.1 869,630 - -0.7 869,630 - -0.9 869,630 - +1.0 869,630 - +0.2 869,630 - -0.7 869,758 - -1.1 869,805 - +0.5 870,117 - -0.2 870,117 - -0.3 870,119 - -0.3 870,134 - -0.7 870,134 - -0.1 870,136 - -0.1 870,136 - +0.5 870,136 - +0.1 870,136 - +0.5 870,176 - -0.1 870,374 - PP_5456 0.79 -3.2 870,374 - PP_5456 0.79 +0.2 870,461 - +0.3 870,524 + +0.2 870,524 + +0.0 870,528 + -0.6 870,528 + +0.2 870,528 + -0.4 870,528 + +0.3 870,528 + -0.2 870,528 + -0.2 870,528 + -1.2 870,528 + -0.3 870,529 - +0.4 870,529 - +0.3 870,529 - -0.0 870,529 - +0.4 870,529 - -0.2 870,529 - -0.6 870,529 - +0.5 870,529 - -0.4 870,530 + -0.1 870,530 + +0.3 870,530 + -0.0 870,531 - +1.2 870,531 - +0.5 870,531 - +0.3 870,531 - +0.2 870,531 - +0.6 870,531 - +1.4 870,531 - -0.0 870,531 - -0.2 870,531 - +0.2 870,531 - +0.7 870,531 - -0.2 870,531 - -0.8 870,531 - +0.3 870,531 - -0.2
Or see this region's nucleotide sequence