Strain Fitness in Pseudomonas putida KT2440 around PP_0176

Experiment: 3-hydroxypentanoate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0174 and PP_0175 are separated by 132 nucleotidesPP_0175 and PP_0176 overlap by 4 nucleotidesPP_0176 and PP_0177 overlap by 4 nucleotidesPP_0177 and PP_0178 overlap by 4 nucleotides PP_0174: PP_0174 - conserved protein of unknown function, at 225,775 to 226,593 _0174 PP_0175: PP_0175 - putative transcriptional regulator, at 226,726 to 227,178 _0175 PP_0176: PP_0176 - putative efflux transporter, at 227,175 to 229,262 _0176 PP_0177: PP_0177 - conserved protein of unknown function, at 229,259 to 229,471 _0177 PP_0178: PP_0178 - putative efflux pump, at 229,468 to 230,343 _0178 Position (kb) 227 228 229 230Strain fitness (log2 ratio) -2 -1 0 1 2at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.177 kb on + strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.178 kb on - strand, within PP_0174at 226.255 kb on + strand, within PP_0174at 226.255 kb on + strand, within PP_0174at 226.255 kb on + strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.256 kb on - strandat 226.256 kb on - strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.256 kb on - strand, within PP_0174at 226.312 kb on + strand, within PP_0174at 226.312 kb on + strand, within PP_0174at 226.313 kb on - strand, within PP_0174at 226.397 kb on + strand, within PP_0174at 226.397 kb on + strand, within PP_0174at 226.397 kb on + strand, within PP_0174at 226.397 kb on + strand, within PP_0174at 226.398 kb on - strand, within PP_0174at 226.398 kb on - strandat 226.398 kb on - strand, within PP_0174at 226.398 kb on - strand, within PP_0174at 226.424 kb on - strand, within PP_0174at 226.511 kb on - strand, within PP_0174at 226.595 kb on + strandat 226.634 kb on - strandat 226.769 kb on + strandat 227.220 kb on + strandat 227.260 kb on - strandat 227.313 kb on + strandat 227.313 kb on + strandat 227.313 kb on + strandat 227.313 kb on + strandat 227.313 kb on + strandat 227.313 kb on + strandat 227.313 kb on + strandat 227.314 kb on - strandat 227.314 kb on - strandat 227.511 kb on + strand, within PP_0176at 227.512 kb on - strand, within PP_0176at 227.512 kb on - strand, within PP_0176at 227.512 kb on - strand, within PP_0176at 227.534 kb on + strand, within PP_0176at 227.534 kb on + strand, within PP_0176at 227.534 kb on + strand, within PP_0176at 227.534 kb on + strand, within PP_0176at 227.535 kb on - strand, within PP_0176at 227.651 kb on + strand, within PP_0176at 227.652 kb on - strand, within PP_0176at 227.736 kb on + strand, within PP_0176at 227.737 kb on - strand, within PP_0176at 227.737 kb on - strand, within PP_0176at 227.796 kb on - strand, within PP_0176at 228.083 kb on + strand, within PP_0176at 228.225 kb on + strand, within PP_0176at 228.226 kb on - strand, within PP_0176at 228.282 kb on + strand, within PP_0176at 228.282 kb on + strand, within PP_0176at 228.283 kb on - strand, within PP_0176at 228.429 kb on + strand, within PP_0176at 228.430 kb on - strand, within PP_0176at 228.553 kb on + strand, within PP_0176at 228.553 kb on + strand, within PP_0176at 228.553 kb on + strand, within PP_0176at 228.553 kb on + strand, within PP_0176at 228.554 kb on - strand, within PP_0176at 228.554 kb on - strand, within PP_0176at 228.568 kb on + strand, within PP_0176at 228.569 kb on - strand, within PP_0176at 228.582 kb on + strand, within PP_0176at 228.582 kb on + strand, within PP_0176at 228.583 kb on - strand, within PP_0176at 228.583 kb on - strand, within PP_0176at 228.659 kb on + strand, within PP_0176at 228.710 kb on + strand, within PP_0176at 228.710 kb on + strand, within PP_0176at 228.710 kb on + strand, within PP_0176at 228.838 kb on + strand, within PP_0176at 228.838 kb on + strand, within PP_0176at 228.954 kb on + strand, within PP_0176at 228.955 kb on - strand, within PP_0176at 229.122 kb on + strandat 229.122 kb on + strandat 229.123 kb on - strandat 229.184 kb on - strandat 229.325 kb on + strand, within PP_0177at 229.325 kb on + strand, within PP_0177at 229.326 kb on - strand, within PP_0177at 229.326 kb on - strand, within PP_0177at 229.326 kb on - strand, within PP_0177at 229.326 kb on - strand, within PP_0177at 229.415 kb on + strand, within PP_0177at 229.415 kb on + strand, within PP_0177at 229.415 kb on + strand, within PP_0177at 229.416 kb on - strand, within PP_0177at 229.416 kb on - strand, within PP_0177at 229.416 kb on - strand, within PP_0177at 229.416 kb on - strand, within PP_0177at 229.558 kb on + strand, within PP_0178at 229.558 kb on + strand, within PP_0178at 229.559 kb on - strand, within PP_0178at 229.559 kb on - strand, within PP_0178at 229.559 kb on - strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.954 kb on + strand, within PP_0178at 229.954 kb on + strand, within PP_0178at 229.955 kb on - strand, within PP_0178at 230.035 kb on + strand, within PP_0178at 230.035 kb on + strand, within PP_0178at 230.036 kb on - strand, within PP_0178at 230.077 kb on - strand, within PP_0178at 230.082 kb on + strand, within PP_0178at 230.083 kb on - strand, within PP_0178at 230.083 kb on - strand, within PP_0178at 230.083 kb on - strand, within PP_0178at 230.229 kb on - strand, within PP_0178

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-hydroxypentanoate
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226,177 + PP_0174 0.49 -0.8
226,177 + PP_0174 0.49 +0.3
226,177 + PP_0174 0.49 +0.7
226,177 + PP_0174 0.49 +0.2
226,177 + PP_0174 0.49 -0.6
226,177 + PP_0174 0.49 +0.6
226,177 + PP_0174 0.49 -0.1
226,177 + PP_0174 0.49 -1.9
226,178 - PP_0174 0.49 +0.4
226,178 - PP_0174 0.49 -0.5
226,178 - PP_0174 0.49 -0.2
226,178 - PP_0174 0.49 +0.7
226,178 - PP_0174 0.49 +0.3
226,255 + PP_0174 0.59 +0.3
226,255 + PP_0174 0.59 +0.0
226,255 + PP_0174 0.59 -0.8
226,256 - PP_0174 0.59 -0.4
226,256 - PP_0174 0.59 -0.5
226,256 - -1.4
226,256 - PP_0174 0.59 +0.6
226,256 - PP_0174 0.59 -0.7
226,256 - PP_0174 0.59 -0.6
226,256 - PP_0174 0.59 +1.6
226,312 + PP_0174 0.66 -0.9
226,312 + PP_0174 0.66 +0.2
226,313 - PP_0174 0.66 -0.3
226,397 + PP_0174 0.76 -0.3
226,397 + PP_0174 0.76 -0.9
226,397 + PP_0174 0.76 +0.3
226,397 + PP_0174 0.76 -0.7
226,398 - PP_0174 0.76 +0.1
226,398 - -0.3
226,398 - PP_0174 0.76 -0.3
226,398 - PP_0174 0.76 -0.7
226,424 - PP_0174 0.79 -0.6
226,511 - PP_0174 0.90 +0.6
226,595 + -0.0
226,634 - +0.2
226,769 + +0.4
227,220 + +0.6
227,260 - +1.0
227,313 + +0.4
227,313 + +1.1
227,313 + +0.8
227,313 + +0.6
227,313 + +0.7
227,313 + +1.3
227,313 + +0.9
227,314 - +1.0
227,314 - +1.0
227,511 + PP_0176 0.16 +0.5
227,512 - PP_0176 0.16 -0.4
227,512 - PP_0176 0.16 +2.0
227,512 - PP_0176 0.16 +1.4
227,534 + PP_0176 0.17 +0.9
227,534 + PP_0176 0.17 +0.3
227,534 + PP_0176 0.17 +1.2
227,534 + PP_0176 0.17 +1.5
227,535 - PP_0176 0.17 +0.3
227,651 + PP_0176 0.23 +0.9
227,652 - PP_0176 0.23 +0.3
227,736 + PP_0176 0.27 +1.2
227,737 - PP_0176 0.27 +0.6
227,737 - PP_0176 0.27 +1.2
227,796 - PP_0176 0.30 +1.0
228,083 + PP_0176 0.43 +0.3
228,225 + PP_0176 0.50 +0.8
228,226 - PP_0176 0.50 +1.2
228,282 + PP_0176 0.53 +1.1
228,282 + PP_0176 0.53 +0.5
228,283 - PP_0176 0.53 +0.5
228,429 + PP_0176 0.60 +0.3
228,430 - PP_0176 0.60 +0.9
228,553 + PP_0176 0.66 +0.5
228,553 + PP_0176 0.66 +1.7
228,553 + PP_0176 0.66 +1.1
228,553 + PP_0176 0.66 +0.2
228,554 - PP_0176 0.66 -0.0
228,554 - PP_0176 0.66 +0.9
228,568 + PP_0176 0.67 +1.0
228,569 - PP_0176 0.67 +0.6
228,582 + PP_0176 0.67 +1.0
228,582 + PP_0176 0.67 +0.9
228,583 - PP_0176 0.67 +2.2
228,583 - PP_0176 0.67 +1.1
228,659 + PP_0176 0.71 +0.8
228,710 + PP_0176 0.74 +0.7
228,710 + PP_0176 0.74 +0.4
228,710 + PP_0176 0.74 +0.5
228,838 + PP_0176 0.80 +1.1
228,838 + PP_0176 0.80 +1.0
228,954 + PP_0176 0.85 +1.8
228,955 - PP_0176 0.85 +1.1
229,122 + +1.1
229,122 + +0.2
229,123 - +1.1
229,184 - +0.9
229,325 + PP_0177 0.31 -0.3
229,325 + PP_0177 0.31 +1.3
229,326 - PP_0177 0.31 +1.0
229,326 - PP_0177 0.31 +1.2
229,326 - PP_0177 0.31 +1.5
229,326 - PP_0177 0.31 +0.7
229,415 + PP_0177 0.73 +0.7
229,415 + PP_0177 0.73 +1.2
229,415 + PP_0177 0.73 +0.4
229,416 - PP_0177 0.74 +0.5
229,416 - PP_0177 0.74 +1.1
229,416 - PP_0177 0.74 +0.5
229,416 - PP_0177 0.74 +0.9
229,558 + PP_0178 0.10 +1.0
229,558 + PP_0178 0.10 +1.3
229,559 - PP_0178 0.10 +0.2
229,559 - PP_0178 0.10 +1.5
229,559 - PP_0178 0.10 +1.2
229,561 + PP_0178 0.11 +0.8
229,561 + PP_0178 0.11 +1.0
229,561 + PP_0178 0.11 +0.5
229,561 + PP_0178 0.11 +0.5
229,561 + PP_0178 0.11 +1.4
229,562 - PP_0178 0.11 +0.9
229,562 - PP_0178 0.11 +0.5
229,562 - PP_0178 0.11 +1.6
229,562 - PP_0178 0.11 +1.2
229,562 - PP_0178 0.11 +1.1
229,954 + PP_0178 0.55 +0.9
229,954 + PP_0178 0.55 +0.7
229,955 - PP_0178 0.56 +1.0
230,035 + PP_0178 0.65 +1.2
230,035 + PP_0178 0.65 +1.7
230,036 - PP_0178 0.65 +1.8
230,077 - PP_0178 0.70 +0.7
230,082 + PP_0178 0.70 +0.8
230,083 - PP_0178 0.70 +1.3
230,083 - PP_0178 0.70 +0.7
230,083 - PP_0178 0.70 +0.7
230,229 - PP_0178 0.87 +1.3

Or see this region's nucleotide sequence