Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04460 and PS417_04470 are separated by 718 nucleotides PS417_04470 and PS417_04475 are separated by 194 nucleotides PS417_04475 and PS417_04480 are separated by 57 nucleotides
PS417_04460: PS417_04460 - malate:quinone oxidoreductase, at 988,699 to 990,207
_04460
PS417_04470: PS417_04470 - hypothetical protein, at 990,926 to 991,159
_04470
PS417_04475: PS417_04475 - hypothetical protein, at 991,354 to 991,941
_04475
PS417_04480: PS417_04480 - hypothetical protein, at 991,999 to 992,208
_04480
Position (kb) 990
991
992 Strain fitness (log2 ratio) -2
-1
0
1
2 at 990.370 kb on + strand at 990.408 kb on - strand at 990.523 kb on + strand at 990.524 kb on - strand at 990.538 kb on - strand at 990.538 kb on - strand at 990.716 kb on + strand at 990.804 kb on - strand at 990.852 kb on + strand at 990.854 kb on + strand at 990.855 kb on - strand at 990.855 kb on - strand at 990.855 kb on - strand at 990.871 kb on + strand at 990.912 kb on + strand at 991.188 kb on - strand at 991.188 kb on - strand at 991.232 kb on + strand at 991.232 kb on + strand at 991.233 kb on - strand at 991.233 kb on - strand at 991.233 kb on - strand at 991.233 kb on - strand at 991.233 kb on - strand at 991.311 kb on + strand at 991.589 kb on + strand, within PS417_04475 at 991.589 kb on + strand, within PS417_04475 at 991.590 kb on - strand, within PS417_04475 at 991.702 kb on + strand, within PS417_04475 at 991.703 kb on - strand, within PS417_04475 at 991.726 kb on + strand, within PS417_04475 at 991.726 kb on + strand, within PS417_04475 at 991.726 kb on + strand, within PS417_04475 at 991.727 kb on - strand, within PS417_04475 at 992.096 kb on + strand, within PS417_04480
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 990,370 + +0.1 990,408 - +1.9 990,523 + +0.1 990,524 - -0.4 990,538 - -0.2 990,538 - -1.8 990,716 + +0.4 990,804 - +0.9 990,852 + +0.1 990,854 + -2.4 990,855 - +0.5 990,855 - +0.2 990,855 - +1.0 990,871 + -0.8 990,912 + +2.2 991,188 - +2.5 991,188 - -0.5 991,232 + +0.6 991,232 + -0.2 991,233 - -0.5 991,233 - +0.0 991,233 - -0.8 991,233 - -0.1 991,233 - -0.4 991,311 + -2.2 991,589 + PS417_04475 0.40 +1.8 991,589 + PS417_04475 0.40 -1.9 991,590 - PS417_04475 0.40 -2.5 991,702 + PS417_04475 0.59 -0.6 991,703 - PS417_04475 0.59 +0.3 991,726 + PS417_04475 0.63 -2.5 991,726 + PS417_04475 0.63 -1.1 991,726 + PS417_04475 0.63 -0.2 991,727 - PS417_04475 0.63 +0.0 992,096 + PS417_04480 0.46 -0.1
Or see this region's nucleotide sequence