Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04385 and PS417_04390 are separated by 11 nucleotides PS417_04390 and PS417_04395 overlap by 4 nucleotides PS417_04395 and PS417_04400 are separated by 114 nucleotides PS417_04400 and PS417_04405 are separated by 23 nucleotides
PS417_04385: PS417_04385 - organic solvent ABC transporter substrate-binding protein, at 977,966 to 978,433
_04385
PS417_04390: PS417_04390 - toluene tolerance protein, at 978,445 to 979,095
_04390
PS417_04395: PS417_04395 - anti-sigma factor antagonist, at 979,092 to 979,397
_04395
PS417_04400: PS417_04400 - BolA family transcriptional regulator, at 979,512 to 979,751
_04400
PS417_04405: PS417_04405 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 979,775 to 981,040
_04405
Position (kb) 979
980 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 978.098 kb on + strand, within PS417_04385 at 978.134 kb on - strand, within PS417_04385 at 978.234 kb on + strand, within PS417_04385 at 978.239 kb on - strand, within PS417_04385 at 978.239 kb on - strand, within PS417_04385 at 978.265 kb on + strand, within PS417_04385 at 978.395 kb on - strand at 978.409 kb on + strand at 978.418 kb on + strand at 978.757 kb on + strand, within PS417_04390 at 978.778 kb on + strand, within PS417_04390 at 978.779 kb on - strand, within PS417_04390 at 978.886 kb on + strand, within PS417_04390 at 978.887 kb on - strand, within PS417_04390 at 979.396 kb on - strand at 979.398 kb on + strand at 979.399 kb on - strand at 979.405 kb on + strand at 979.406 kb on - strand at 979.406 kb on - strand at 979.409 kb on - strand at 979.436 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 978,098 + PS417_04385 0.28 -2.2 978,134 - PS417_04385 0.36 -3.7 978,234 + PS417_04385 0.57 -0.5 978,239 - PS417_04385 0.58 -0.7 978,239 - PS417_04385 0.58 +0.4 978,265 + PS417_04385 0.64 -3.2 978,395 - -1.2 978,409 + -0.1 978,418 + -1.8 978,757 + PS417_04390 0.48 -2.9 978,778 + PS417_04390 0.51 -0.5 978,779 - PS417_04390 0.51 -2.9 978,886 + PS417_04390 0.68 -2.6 978,887 - PS417_04390 0.68 -1.7 979,396 - -1.7 979,398 + -0.4 979,399 - -0.6 979,405 + -2.0 979,406 - -1.2 979,406 - +0.3 979,409 - -1.8 979,436 - +1.0
Or see this region's nucleotide sequence