Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00415 and PS417_00420 are separated by 34 nucleotides PS417_00420 and PS417_00425 are separated by 168 nucleotides PS417_00425 and PS417_00430 are separated by 10 nucleotides PS417_00430 and PS417_00435 overlap by 4 nucleotides
PS417_00415: PS417_00415 - cytochrome, at 81,859 to 82,161
_00415
PS417_00420: PS417_00420 - cytochrome C, at 82,196 to 82,822
_00420
PS417_00425: PS417_00425 - thiol:disulfide interchange protein, at 82,991 to 83,626
_00425
PS417_00430: PS417_00430 - endonuclease, at 83,637 to 84,515
_00430
PS417_00435: PS417_00435 - DeoR faimly transcriptional regulator, at 84,512 to 86,566
_00435
Position (kb) 82
83
84 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 82.159 kb on + strand at 82.159 kb on + strand at 82.159 kb on + strand at 82.166 kb on + strand at 82.821 kb on - strand at 82.832 kb on - strand at 82.849 kb on - strand at 82.868 kb on - strand at 82.971 kb on + strand at 82.985 kb on + strand at 83.624 kb on + strand at 83.790 kb on + strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 84.189 kb on + strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.213 kb on + strand, within PS417_00430 at 84.214 kb on - strand, within PS417_00430 at 84.357 kb on - strand, within PS417_00430 at 84.357 kb on - strand, within PS417_00430 at 84.371 kb on + strand, within PS417_00430 at 84.551 kb on - strand at 84.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 82,159 + +0.4 82,159 + +0.1 82,159 + -1.3 82,166 + -0.5 82,821 - -1.1 82,832 - +2.8 82,849 - -0.5 82,868 - +9.5 82,971 + -1.3 82,985 + -0.7 83,624 + +1.8 83,790 + PS417_00430 0.17 -0.1 83,791 - PS417_00430 0.18 -0.2 83,791 - PS417_00430 0.18 +2.4 83,791 - PS417_00430 0.18 -1.4 84,189 + PS417_00430 0.63 -2.1 84,190 - PS417_00430 0.63 -0.2 84,190 - PS417_00430 0.63 -2.1 84,190 - PS417_00430 0.63 +2.0 84,213 + PS417_00430 0.66 +0.7 84,214 - PS417_00430 0.66 -0.3 84,357 - PS417_00430 0.82 -1.0 84,357 - PS417_00430 0.82 -1.6 84,371 + PS417_00430 0.84 +1.2 84,551 - -0.9 84,551 - -0.2
Or see this region's nucleotide sequence