Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04025 and PS417_04030 are separated by 330 nucleotides PS417_04030 and PS417_04035 are separated by 167 nucleotides PS417_04035 and PS417_04040 are separated by 96 nucleotides PS417_04040 and PS417_04045 are separated by 113 nucleotides
PS417_04025: PS417_04025 - glycine/betaine ABC transporter permease, at 903,730 to 904,446
_04025
PS417_04030: PS417_04030 - peptide chain release factor 3, at 904,777 to 906,360
_04030
PS417_04035: PS417_04035 - hypothetical protein, at 906,528 to 906,773
_04035
PS417_04040: PS417_04040 - hypothetical protein, at 906,870 to 907,124
_04040
PS417_04045: PS417_04045 - peptide ABC transporter ATP-binding protein, at 907,238 to 908,209
_04045
Position (kb) 904
905
906
907 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 904.015 kb on - strand, within PS417_04025 at 904.015 kb on - strand, within PS417_04025 at 904.070 kb on + strand, within PS417_04025 at 904.070 kb on + strand, within PS417_04025 at 904.071 kb on - strand, within PS417_04025 at 904.075 kb on - strand at 904.075 kb on - strand, within PS417_04025 at 904.325 kb on + strand, within PS417_04025 at 904.326 kb on - strand, within PS417_04025 at 904.593 kb on + strand at 904.606 kb on + strand at 904.651 kb on + strand at 904.658 kb on + strand at 904.658 kb on + strand at 904.684 kb on + strand at 904.735 kb on + strand at 904.735 kb on + strand at 906.376 kb on + strand at 906.376 kb on + strand at 906.377 kb on - strand at 906.484 kb on + strand at 906.484 kb on + strand at 906.485 kb on - strand at 906.492 kb on + strand at 906.533 kb on + strand at 906.534 kb on - strand at 906.534 kb on - strand at 906.534 kb on - strand at 906.534 kb on - strand at 906.726 kb on + strand, within PS417_04035 at 906.727 kb on - strand, within PS417_04035 at 906.753 kb on + strand at 906.754 kb on - strand at 906.844 kb on + strand at 906.844 kb on + strand at 906.844 kb on + strand at 907.122 kb on + strand at 907.123 kb on - strand at 907.186 kb on - strand at 907.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 904,015 - PS417_04025 0.40 -1.8 904,015 - PS417_04025 0.40 +0.3 904,070 + PS417_04025 0.47 -1.9 904,070 + PS417_04025 0.47 +0.0 904,071 - PS417_04025 0.48 +2.2 904,075 - +3.3 904,075 - PS417_04025 0.48 -0.8 904,325 + PS417_04025 0.83 -0.6 904,326 - PS417_04025 0.83 +3.1 904,593 + +0.7 904,606 + -0.6 904,651 + -0.2 904,658 + +0.4 904,658 + -0.2 904,684 + +0.6 904,735 + -0.2 904,735 + -0.8 906,376 + -0.8 906,376 + -0.3 906,377 - +0.3 906,484 + -0.6 906,484 + -0.6 906,485 - +0.1 906,492 + -0.1 906,533 + +0.6 906,534 - -0.0 906,534 - -1.0 906,534 - +0.9 906,534 - -0.4 906,726 + PS417_04035 0.80 -1.0 906,727 - PS417_04035 0.81 -0.1 906,753 + +0.2 906,754 - -0.5 906,844 + -0.1 906,844 + -0.4 906,844 + -0.7 907,122 + -0.6 907,123 - +0.6 907,186 - -1.0 907,186 - +0.4
Or see this region's nucleotide sequence