Strain Fitness in Pseudomonas simiae WCS417 around PS417_00400

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00395 and PS417_00400 are separated by 56 nucleotidesPS417_00400 and PS417_00405 are separated by 74 nucleotides PS417_00395: PS417_00395 - serine kinase, at 76,603 to 77,556 _00395 PS417_00400: PS417_00400 - hypothetical protein, at 77,613 to 77,903 _00400 PS417_00405: PS417_00405 - DNA polymerase I, at 77,978 to 80,755 _00405 Position (kb) 77 78Strain fitness (log2 ratio) -1 0 1 2 3 4at 76.808 kb on + strand, within PS417_00395at 77.186 kb on - strand, within PS417_00395at 77.607 kb on - strandat 77.652 kb on - strand, within PS417_00400at 77.897 kb on + strandat 77.897 kb on + strandat 77.897 kb on + strandat 77.898 kb on - strandat 77.898 kb on - strandat 77.898 kb on - strandat 77.906 kb on + strandat 78.806 kb on + strand, within PS417_00405at 78.865 kb on - strand, within PS417_00405

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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76,808 + PS417_00395 0.21 +1.8
77,186 - PS417_00395 0.61 -0.3
77,607 - -0.2
77,652 - PS417_00400 0.13 -1.3
77,897 + -1.2
77,897 + +1.3
77,897 + -0.4
77,898 - +1.0
77,898 - -0.2
77,898 - -0.4
77,906 + +0.3
78,806 + PS417_00405 0.30 +0.4
78,865 - PS417_00405 0.32 +4.2

Or see this region's nucleotide sequence