Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03875 and PS417_03880 are separated by 75 nucleotides PS417_03880 and PS417_03885 overlap by 4 nucleotides PS417_03885 and PS417_03890 overlap by 4 nucleotides PS417_03890 and PS417_03895 overlap by 4 nucleotides PS417_03895 and PS417_03900 overlap by 4 nucleotides
PS417_03875: PS417_03875 - membrane protein, at 869,653 to 870,342
_03875
PS417_03880: PS417_03880 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 870,418 to 870,633
_03880
PS417_03885: PS417_03885 - DNA gyrase inhibitor, at 870,630 to 870,830
_03885
PS417_03890: PS417_03890 - dephospho-CoA kinase, at 870,827 to 871,450
_03890
PS417_03895: PS417_03895 - methyltransferase, at 871,447 to 872,313
_03895
PS417_03900: PS417_03900 - type II secretion system protein F, at 872,310 to 873,518
_03900
Position (kb) 870
871
872 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9
10 at 870.070 kb on + strand, within PS417_03875 at 870.071 kb on - strand, within PS417_03875 at 870.072 kb on + strand, within PS417_03875 at 870.427 kb on + strand at 870.427 kb on + strand at 870.613 kb on + strand at 870.613 kb on + strand at 870.622 kb on - strand at 870.850 kb on + strand at 870.851 kb on - strand at 871.473 kb on - strand at 871.843 kb on + strand, within PS417_03895 at 871.844 kb on - strand, within PS417_03895 at 871.844 kb on - strand, within PS417_03895 at 872.052 kb on - strand, within PS417_03895 at 872.083 kb on + strand, within PS417_03895 at 872.132 kb on + strand, within PS417_03895 at 872.344 kb on + strand at 872.344 kb on + strand at 872.449 kb on + strand, within PS417_03900 at 872.450 kb on - strand, within PS417_03900 at 872.450 kb on - strand, within PS417_03900
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 870,070 + PS417_03875 0.60 -0.2 870,071 - PS417_03875 0.61 -1.0 870,072 + PS417_03875 0.61 +0.7 870,427 + +0.5 870,427 + +1.0 870,613 + +0.0 870,613 + +0.4 870,622 - -0.9 870,850 + -0.7 870,851 - +1.5 871,473 - -0.7 871,843 + PS417_03895 0.46 +1.2 871,844 - PS417_03895 0.46 +10.2 871,844 - PS417_03895 0.46 +0.5 872,052 - PS417_03895 0.70 -0.2 872,083 + PS417_03895 0.73 +1.1 872,132 + PS417_03895 0.79 +2.4 872,344 + -0.6 872,344 + +0.0 872,449 + PS417_03900 0.11 -0.2 872,450 - PS417_03900 0.12 -0.2 872,450 - PS417_03900 0.12 -0.9
Or see this region's nucleotide sequence