Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03830 and PS417_03835 are separated by 300 nucleotides PS417_03835 and PS417_03840 are separated by 10 nucleotides PS417_03840 and PS417_03845 are separated by 5 nucleotides PS417_03845 and PS417_03850 are separated by 94 nucleotides PS417_03850 and PS417_03855 are separated by 192 nucleotides
PS417_03830: PS417_03830 - protein disaggregation chaperone, at 863,397 to 865,961
_03830
PS417_03835: PS417_03835 - tRNA-Asn, at 866,262 to 866,337
_03835
PS417_03840: PS417_03840 - tRNA-Pro, at 866,348 to 866,424
_03840
PS417_03845: PS417_03845 - tRNA-Lys, at 866,430 to 866,505
_03845
PS417_03850: PS417_03850 - tRNA-Pro, at 866,600 to 866,676
_03850
PS417_03855: PS417_03855 - NADH dehydrogenase, at 866,869 to 868,167
_03855
Position (kb) 866
867 Strain fitness (log2 ratio) -2
-1
0
1
2 at 865.353 kb on + strand, within PS417_03830 at 865.353 kb on + strand, within PS417_03830 at 865.354 kb on - strand, within PS417_03830 at 865.354 kb on - strand, within PS417_03830 at 865.377 kb on + strand, within PS417_03830 at 865.772 kb on - strand at 865.807 kb on + strand at 865.813 kb on - strand at 865.825 kb on - strand at 865.825 kb on - strand at 865.980 kb on + strand at 866.677 kb on + strand at 866.843 kb on - strand at 866.852 kb on + strand at 866.852 kb on + strand at 866.984 kb on + strand at 866.984 kb on + strand at 866.985 kb on - strand at 866.985 kb on - strand at 867.086 kb on + strand, within PS417_03855 at 867.086 kb on + strand, within PS417_03855 at 867.087 kb on - strand, within PS417_03855 at 867.095 kb on + strand, within PS417_03855 at 867.095 kb on + strand, within PS417_03855 at 867.095 kb on + strand, within PS417_03855 at 867.096 kb on - strand, within PS417_03855 at 867.101 kb on + strand, within PS417_03855 at 867.101 kb on + strand, within PS417_03855 at 867.102 kb on - strand, within PS417_03855 at 867.191 kb on - strand, within PS417_03855 at 867.362 kb on - strand, within PS417_03855
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 865,353 + PS417_03830 0.76 +0.1 865,353 + PS417_03830 0.76 -0.2 865,354 - PS417_03830 0.76 -0.9 865,354 - PS417_03830 0.76 +0.1 865,377 + PS417_03830 0.77 -0.6 865,772 - -1.8 865,807 + -0.4 865,813 - -1.9 865,825 - -1.4 865,825 - -1.0 865,980 + +1.6 866,677 + -0.7 866,843 - -0.3 866,852 + +1.3 866,852 + -0.6 866,984 + -1.0 866,984 + -0.5 866,985 - +1.8 866,985 - -0.1 867,086 + PS417_03855 0.17 -0.9 867,086 + PS417_03855 0.17 -0.4 867,087 - PS417_03855 0.17 +0.4 867,095 + PS417_03855 0.17 -1.7 867,095 + PS417_03855 0.17 +0.1 867,095 + PS417_03855 0.17 +0.4 867,096 - PS417_03855 0.17 -0.3 867,101 + PS417_03855 0.18 -2.3 867,101 + PS417_03855 0.18 -1.1 867,102 - PS417_03855 0.18 -0.4 867,191 - PS417_03855 0.25 -0.8 867,362 - PS417_03855 0.38 +2.1
Or see this region's nucleotide sequence