Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03815 and PS417_03820 are separated by 149 nucleotides PS417_03820 and PS417_03825 overlap by 4 nucleotides PS417_03825 and PS417_03830 are separated by 130 nucleotides
PS417_03815: PS417_03815 - DNA transporter, at 860,407 to 861,432
_03815
PS417_03820: PS417_03820 - ribosomal large subunit pseudouridine synthase D, at 861,582 to 862,544
_03820
PS417_03825: PS417_03825 - laccase, at 862,541 to 863,266
_03825
PS417_03830: PS417_03830 - protein disaggregation chaperone, at 863,397 to 865,961
_03830
Position (kb) 861
862
863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 860.630 kb on + strand, within PS417_03815 at 860.631 kb on - strand, within PS417_03815 at 860.631 kb on - strand, within PS417_03815 at 860.631 kb on - strand, within PS417_03815 at 860.631 kb on - strand, within PS417_03815 at 861.572 kb on + strand at 862.717 kb on + strand, within PS417_03825 at 862.718 kb on - strand, within PS417_03825 at 862.974 kb on + strand, within PS417_03825 at 862.974 kb on + strand, within PS417_03825 at 862.974 kb on + strand, within PS417_03825 at 862.975 kb on - strand, within PS417_03825 at 863.117 kb on + strand, within PS417_03825 at 863.117 kb on + strand, within PS417_03825 at 863.118 kb on - strand, within PS417_03825 at 863.118 kb on - strand, within PS417_03825 at 863.118 kb on - strand, within PS417_03825 at 863.118 kb on - strand, within PS417_03825 at 863.118 kb on - strand, within PS417_03825 at 863.118 kb on - strand, within PS417_03825 at 863.119 kb on + strand, within PS417_03825 at 863.119 kb on + strand, within PS417_03825 at 863.119 kb on + strand, within PS417_03825 at 863.120 kb on - strand, within PS417_03825 at 863.248 kb on + strand at 863.249 kb on - strand at 863.324 kb on + strand at 863.324 kb on + strand at 863.325 kb on - strand at 863.325 kb on - strand at 863.325 kb on - strand at 863.325 kb on - strand at 863.332 kb on + strand at 863.363 kb on + strand at 863.364 kb on - strand at 863.364 kb on - strand at 863.366 kb on - strand at 863.396 kb on - strand at 863.402 kb on + strand at 863.426 kb on - strand at 863.531 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 860,630 + PS417_03815 0.22 -0.2 860,631 - PS417_03815 0.22 -0.8 860,631 - PS417_03815 0.22 -0.4 860,631 - PS417_03815 0.22 -1.1 860,631 - PS417_03815 0.22 -1.0 861,572 + -1.1 862,717 + PS417_03825 0.24 -1.7 862,718 - PS417_03825 0.24 -0.6 862,974 + PS417_03825 0.60 -0.4 862,974 + PS417_03825 0.60 -0.6 862,974 + PS417_03825 0.60 +1.8 862,975 - PS417_03825 0.60 -1.0 863,117 + PS417_03825 0.79 -1.2 863,117 + PS417_03825 0.79 +0.6 863,118 - PS417_03825 0.79 +1.6 863,118 - PS417_03825 0.79 -2.3 863,118 - PS417_03825 0.79 -0.4 863,118 - PS417_03825 0.79 -0.6 863,118 - PS417_03825 0.79 +0.3 863,118 - PS417_03825 0.79 +2.1 863,119 + PS417_03825 0.80 +0.7 863,119 + PS417_03825 0.80 -0.4 863,119 + PS417_03825 0.80 +2.5 863,120 - PS417_03825 0.80 +0.2 863,248 + +0.3 863,249 - +0.3 863,324 + -0.5 863,324 + -0.6 863,325 - -1.3 863,325 - +1.6 863,325 - -1.6 863,325 - +1.1 863,332 + -0.6 863,363 + -0.9 863,364 - -3.1 863,364 - +0.3 863,366 - -0.7 863,396 - -1.5 863,402 + -0.1 863,426 - +0.6 863,531 + -0.2
Or see this region's nucleotide sequence