Strain Fitness in Pseudomonas simiae WCS417 around PS417_03765

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03760 and PS417_03765 overlap by 8 nucleotidesPS417_03765 and PS417_03770 overlap by 8 nucleotidesPS417_03770 and PS417_03775 are separated by 168 nucleotides PS417_03760: PS417_03760 - isoleucine--tRNA ligase, at 851,125 to 853,956 _03760 PS417_03765: PS417_03765 - peptidase A8, at 853,949 to 854,461 _03765 PS417_03770: PS417_03770 - peptidylprolyl isomerase, at 854,454 to 854,906 _03770 PS417_03775: PS417_03775 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 855,075 to 856,022 _03775 Position (kb) 853 854 855Strain fitness (log2 ratio) -1 0 1 2at 854.419 kb on + strandat 854.420 kb on - strandat 854.970 kb on + strandat 854.970 kb on + strandat 855.008 kb on + strandat 855.024 kb on + strandat 855.024 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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854,419 + +1.6
854,420 - +0.4
854,970 + -1.0
854,970 + +0.8
855,008 + -0.9
855,024 + +2.1
855,024 + -0.5

Or see this region's nucleotide sequence