Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03730 and PS417_03735 are separated by 85 nucleotides PS417_03735 and PS417_03740 are separated by 91 nucleotides PS417_03740 and PS417_03745 are separated by 255 nucleotides
PS417_03730: PS417_03730 - phosphate acetyltransferase, at 844,773 to 846,872
_03730
PS417_03735: PS417_03735 - hypothetical protein, at 846,958 to 847,149
_03735
PS417_03740: PS417_03740 - peptidylprolyl isomerase, at 847,241 to 847,726
_03740
PS417_03745: PS417_03745 - 30S ribosomal protein S20, at 847,982 to 848,260
_03745
Position (kb) 846
847
848 Strain fitness (log2 ratio) -1
0
1
2 at 846.910 kb on + strand at 846.910 kb on + strand at 846.910 kb on + strand at 846.910 kb on + strand at 846.910 kb on + strand at 846.911 kb on - strand at 847.277 kb on + strand at 847.278 kb on - strand at 847.280 kb on - strand at 847.280 kb on - strand at 847.340 kb on + strand, within PS417_03740 at 847.357 kb on + strand, within PS417_03740 at 847.358 kb on - strand, within PS417_03740 at 847.358 kb on - strand, within PS417_03740 at 847.425 kb on + strand, within PS417_03740 at 847.452 kb on - strand, within PS417_03740 at 847.742 kb on + strand at 847.742 kb on + strand at 847.746 kb on + strand at 847.746 kb on + strand at 847.851 kb on + strand at 847.852 kb on - strand at 847.852 kb on - strand at 847.852 kb on - strand at 847.852 kb on - strand at 847.852 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 846,910 + -1.5 846,910 + -0.7 846,910 + -0.4 846,910 + -1.1 846,910 + -0.0 846,911 - +0.2 847,277 + +1.1 847,278 - +0.1 847,280 - +0.0 847,280 - +0.8 847,340 + PS417_03740 0.20 +0.2 847,357 + PS417_03740 0.24 +0.2 847,358 - PS417_03740 0.24 -0.1 847,358 - PS417_03740 0.24 -0.8 847,425 + PS417_03740 0.38 +1.0 847,452 - PS417_03740 0.43 -0.6 847,742 + +0.0 847,742 + -0.2 847,746 + +1.9 847,746 + +1.3 847,851 + +1.1 847,852 - -0.5 847,852 - -0.8 847,852 - +0.3 847,852 - -1.4 847,852 - -0.3
Or see this region's nucleotide sequence