Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03685 and PS417_03690 are separated by 209 nucleotides PS417_03690 and PS417_03695 are separated by 14 nucleotides
PS417_03685: PS417_03685 - FAD-dependent oxidoreductase, at 833,237 to 834,223
_03685
PS417_03690: PS417_03690 - NAD-dependent dehydratase, at 834,433 to 835,332
_03690
PS417_03695: PS417_03695 - ferrochelatase, at 835,347 to 836,372
_03695
Position (kb) 834
835
836 Strain fitness (log2 ratio) -1
0
1
2
3 at 833.968 kb on - strand, within PS417_03685 at 834.055 kb on - strand, within PS417_03685 at 834.238 kb on + strand at 834.248 kb on - strand at 834.268 kb on + strand at 834.269 kb on - strand at 834.269 kb on - strand at 834.295 kb on - strand at 834.335 kb on - strand at 834.385 kb on - strand at 834.386 kb on + strand at 834.392 kb on - strand at 834.416 kb on + strand at 834.567 kb on - strand, within PS417_03690 at 835.025 kb on + strand, within PS417_03690 at 835.026 kb on - strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.090 kb on + strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.092 kb on + strand, within PS417_03690 at 835.092 kb on + strand, within PS417_03690 at 835.093 kb on - strand, within PS417_03690 at 835.093 kb on - strand, within PS417_03690 at 835.330 kb on + strand at 835.336 kb on + strand at 835.336 kb on + strand at 835.336 kb on + strand at 835.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 833,968 - PS417_03685 0.74 +0.1 834,055 - PS417_03685 0.83 -0.7 834,238 + +1.0 834,248 - -0.5 834,268 + +1.8 834,269 - +0.2 834,269 - -0.3 834,295 - -0.1 834,335 - +0.6 834,385 - +0.6 834,386 + -0.7 834,392 - +0.1 834,416 + -0.9 834,567 - PS417_03690 0.15 -0.2 835,025 + PS417_03690 0.66 -0.3 835,026 - PS417_03690 0.66 -0.6 835,029 + PS417_03690 0.66 -0.1 835,029 + PS417_03690 0.66 -1.3 835,029 + PS417_03690 0.66 -0.8 835,029 + PS417_03690 0.66 -1.6 835,029 + PS417_03690 0.66 +0.2 835,029 + PS417_03690 0.66 +1.3 835,029 + PS417_03690 0.66 +1.0 835,030 - PS417_03690 0.66 -0.5 835,030 - PS417_03690 0.66 +2.5 835,030 - PS417_03690 0.66 -0.1 835,030 - PS417_03690 0.66 -1.6 835,030 - PS417_03690 0.66 +0.5 835,030 - PS417_03690 0.66 +0.0 835,030 - PS417_03690 0.66 -0.3 835,030 - PS417_03690 0.66 -0.5 835,030 - PS417_03690 0.66 -0.5 835,030 - PS417_03690 0.66 +1.1 835,090 + PS417_03690 0.73 -0.9 835,091 - PS417_03690 0.73 -0.3 835,091 - PS417_03690 0.73 -0.1 835,091 - PS417_03690 0.73 -0.7 835,091 - PS417_03690 0.73 -0.6 835,092 + PS417_03690 0.73 -0.6 835,092 + PS417_03690 0.73 +0.4 835,093 - PS417_03690 0.73 -0.9 835,093 - PS417_03690 0.73 -1.4 835,330 + +1.3 835,336 + +3.1 835,336 + +0.6 835,336 + +3.1 835,337 - +0.6
Or see this region's nucleotide sequence