Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03665 and PS417_03670 are separated by 0 nucleotides PS417_03670 and PS417_03675 are separated by 3 nucleotides PS417_03675 and PS417_03680 are separated by 111 nucleotides PS417_03680 and PS417_03685 overlap by 4 nucleotides
PS417_03665: PS417_03665 - deoxyribodipyrimidine photolyase, at 829,575 to 831,020
_03665
PS417_03670: PS417_03670 - MerR family transcriptional regulator, at 831,021 to 831,950
_03670
PS417_03675: PS417_03675 - hypothetical protein, at 831,954 to 832,913
_03675
PS417_03680: PS417_03680 - hypothetical protein, at 833,025 to 833,240
_03680
PS417_03685: PS417_03685 - FAD-dependent oxidoreductase, at 833,237 to 834,223
_03685
Position (kb) 831
832
833 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 831.022 kb on + strand at 831.105 kb on + strand at 831.132 kb on + strand, within PS417_03670 at 831.217 kb on + strand, within PS417_03670 at 831.218 kb on - strand, within PS417_03670 at 831.218 kb on - strand, within PS417_03670 at 831.408 kb on - strand, within PS417_03670 at 831.416 kb on - strand, within PS417_03670 at 831.749 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.756 kb on + strand, within PS417_03670 at 831.757 kb on - strand, within PS417_03670 at 831.757 kb on - strand, within PS417_03670 at 831.933 kb on + strand at 831.955 kb on + strand at 832.018 kb on + strand at 832.018 kb on + strand at 832.333 kb on + strand, within PS417_03675 at 832.333 kb on + strand, within PS417_03675 at 832.333 kb on + strand, within PS417_03675 at 832.334 kb on - strand, within PS417_03675 at 832.340 kb on - strand, within PS417_03675 at 832.513 kb on + strand, within PS417_03675 at 832.514 kb on - strand, within PS417_03675 at 832.514 kb on - strand, within PS417_03675 at 832.559 kb on - strand, within PS417_03675 at 832.652 kb on - strand, within PS417_03675 at 832.913 kb on + strand at 832.974 kb on + strand at 832.974 kb on + strand at 833.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 831,022 + +1.0 831,105 + +0.6 831,132 + PS417_03670 0.12 +1.3 831,217 + PS417_03670 0.21 -0.0 831,218 - PS417_03670 0.21 +1.9 831,218 - PS417_03670 0.21 +1.9 831,408 - PS417_03670 0.42 +1.6 831,416 - PS417_03670 0.42 +2.4 831,749 + PS417_03670 0.78 +0.6 831,756 + PS417_03670 0.79 +1.5 831,756 + PS417_03670 0.79 +0.8 831,756 + PS417_03670 0.79 +1.7 831,756 + PS417_03670 0.79 +1.8 831,757 - PS417_03670 0.79 +1.4 831,757 - PS417_03670 0.79 +0.8 831,933 + +1.9 831,955 + -0.6 832,018 + +1.4 832,018 + +1.4 832,333 + PS417_03675 0.39 +2.4 832,333 + PS417_03675 0.39 -0.4 832,333 + PS417_03675 0.39 +1.4 832,334 - PS417_03675 0.40 +0.2 832,340 - PS417_03675 0.40 -2.1 832,513 + PS417_03675 0.58 +2.7 832,514 - PS417_03675 0.58 +0.7 832,514 - PS417_03675 0.58 +2.1 832,559 - PS417_03675 0.63 +0.3 832,652 - PS417_03675 0.73 +1.3 832,913 + +2.9 832,974 + -0.1 832,974 + +2.0 833,332 - +1.8
Or see this region's nucleotide sequence