Strain Fitness in Pseudomonas simiae WCS417 around PS417_03610

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03605 and PS417_03610 are separated by 0 nucleotidesPS417_03610 and PS417_03615 overlap by 7 nucleotidesPS417_03615 and PS417_03620 overlap by 8 nucleotides PS417_03605: PS417_03605 - peptide chain release factor 1, at 820,025 to 821,107 _03605 PS417_03610: PS417_03610 - SAM-dependent methyltransferase, at 821,108 to 821,938 _03610 PS417_03615: PS417_03615 - molybdopterin-synthase adenylyltransferase, at 821,932 to 822,687 _03615 PS417_03620: PS417_03620 - glutamate racemase, at 822,680 to 823,474 _03620 Position (kb) 821 822Strain fitness (log2 ratio) -1 0 1at 821.105 kb on + strandat 821.105 kb on + strandat 822.456 kb on - strand, within PS417_03615

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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821,105 + -0.8
821,105 + +1.5
822,456 - PS417_03615 0.69 -1.1

Or see this region's nucleotide sequence