Strain Fitness in Pseudomonas simiae WCS417 around PS417_03595

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03585 and PS417_03590 are separated by 1 nucleotidesPS417_03590 and PS417_03595 are separated by 4 nucleotidesPS417_03595 and PS417_03600 are separated by 183 nucleotides PS417_03585: PS417_03585 - kinase, at 815,356 to 816,207 _03585 PS417_03590: PS417_03590 - membrane protein, at 816,209 to 816,826 _03590 PS417_03595: PS417_03595 - hypothetical protein, at 816,831 to 818,555 _03595 PS417_03600: PS417_03600 - glutamyl-tRNA reductase, at 818,739 to 820,028 _03600 Position (kb) 816 817 818 819Strain fitness (log2 ratio) -1 0 1 2 3at 816.827 kb on - strandat 816.827 kb on - strandat 816.833 kb on - strandat 818.550 kb on - strandat 818.558 kb on - strandat 818.558 kb on - strandat 818.558 kb on - strandat 818.558 kb on - strandat 818.654 kb on + strandat 818.654 kb on + strandat 818.654 kb on + strandat 818.655 kb on - strandat 818.656 kb on + strandat 818.656 kb on + strandat 818.666 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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816,827 - -0.2
816,827 - -0.1
816,833 - -0.1
818,550 - +0.5
818,558 - -0.2
818,558 - +1.5
818,558 - +1.9
818,558 - -1.6
818,654 + -0.6
818,654 + +1.2
818,654 + +3.1
818,655 - +1.3
818,656 + -0.2
818,656 + -1.0
818,666 - -0.0

Or see this region's nucleotide sequence