Strain Fitness in Pseudomonas simiae WCS417 around PS417_03585

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03575 and PS417_03580 are separated by 44 nucleotidesPS417_03580 and PS417_03585 are separated by 36 nucleotidesPS417_03585 and PS417_03590 are separated by 1 nucleotidesPS417_03590 and PS417_03595 are separated by 4 nucleotides PS417_03575: PS417_03575 - ribose-phosphate pyrophosphokinase, at 814,259 to 815,200 _03575 PS417_03580: PS417_03580 - tRNA-Gln, at 815,245 to 815,319 _03580 PS417_03585: PS417_03585 - kinase, at 815,356 to 816,207 _03585 PS417_03590: PS417_03590 - membrane protein, at 816,209 to 816,826 _03590 PS417_03595: PS417_03595 - hypothetical protein, at 816,831 to 818,555 _03595 Position (kb) 815 816 817Strain fitness (log2 ratio) -1 0 1 2at 815.240 kb on - strandat 816.827 kb on - strandat 816.827 kb on - strandat 816.833 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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815,240 - +2.2
816,827 - -0.2
816,827 - -0.1
816,833 - -0.1

Or see this region's nucleotide sequence