Strain Fitness in Pseudomonas simiae WCS417 around PS417_03565

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03560 and PS417_03565 are separated by 21 nucleotidesPS417_03565 and PS417_03570 are separated by 167 nucleotidesPS417_03570 and PS417_03575 are separated by 137 nucleotides PS417_03560: PS417_03560 - GTP-binding protein, at 811,651 to 812,751 _03560 PS417_03565: PS417_03565 - peptidyl-tRNA hydrolase, at 812,773 to 813,357 _03565 PS417_03570: PS417_03570 - 50S ribosomal protein L25, at 813,525 to 814,121 _03570 PS417_03575: PS417_03575 - ribose-phosphate pyrophosphokinase, at 814,259 to 815,200 _03575 Position (kb) 812 813 814Strain fitness (log2 ratio) -1 0 1at 811.922 kb on + strand, within PS417_03560at 812.135 kb on + strand, within PS417_03560at 812.135 kb on + strand, within PS417_03560at 812.135 kb on + strand, within PS417_03560

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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811,922 + PS417_03560 0.25 +0.8
812,135 + PS417_03560 0.44 -0.9
812,135 + PS417_03560 0.44 -1.3
812,135 + PS417_03560 0.44 -0.6

Or see this region's nucleotide sequence