Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03470 and PS417_03475 overlap by 14 nucleotides PS417_03475 and PS417_03480 overlap by 4 nucleotides PS417_03480 and PS417_03485 overlap by 4 nucleotides
PS417_03470: PS417_03470 - ATP synthase, at 798,058 to 799,416
_03470
PS417_03475: PS417_03475 - type III secretion protein, at 799,403 to 799,831
_03475
PS417_03480: PS417_03480 - type III secretion protein, at 799,828 to 800,286
_03480
PS417_03485: PS417_03485 - type III secretion protein, at 800,283 to 801,296
_03485
Position (kb) 799
800
801 Strain fitness (log2 ratio) -1
0
1 at 799.015 kb on + strand, within PS417_03470 at 799.015 kb on + strand, within PS417_03470 at 799.016 kb on - strand, within PS417_03470 at 799.232 kb on - strand, within PS417_03470 at 799.402 kb on + strand at 799.402 kb on + strand at 799.403 kb on - strand at 799.617 kb on + strand, within PS417_03475 at 799.618 kb on - strand, within PS417_03475 at 799.618 kb on - strand, within PS417_03475 at 799.800 kb on + strand at 799.800 kb on + strand at 800.096 kb on - strand, within PS417_03480 at 800.610 kb on + strand, within PS417_03485 at 800.722 kb on + strand, within PS417_03485 at 800.723 kb on - strand, within PS417_03485 at 800.994 kb on - strand, within PS417_03485 at 801.058 kb on + strand, within PS417_03485 at 801.103 kb on + strand, within PS417_03485 at 801.104 kb on - strand, within PS417_03485 at 801.104 kb on - strand, within PS417_03485 at 801.104 kb on - strand, within PS417_03485 at 801.126 kb on - strand, within PS417_03485 at 801.204 kb on + strand at 801.204 kb on + strand at 801.204 kb on + strand at 801.247 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 799,015 + PS417_03470 0.70 -0.8 799,015 + PS417_03470 0.70 +0.5 799,016 - PS417_03470 0.70 +0.9 799,232 - PS417_03470 0.86 +1.6 799,402 + +0.3 799,402 + -0.0 799,403 - -0.5 799,617 + PS417_03475 0.50 +0.3 799,618 - PS417_03475 0.50 -0.1 799,618 - PS417_03475 0.50 +0.7 799,800 + -0.8 799,800 + +0.4 800,096 - PS417_03480 0.58 +0.9 800,610 + PS417_03485 0.32 -0.1 800,722 + PS417_03485 0.43 -0.8 800,723 - PS417_03485 0.43 -0.7 800,994 - PS417_03485 0.70 -0.7 801,058 + PS417_03485 0.76 -1.2 801,103 + PS417_03485 0.81 +0.1 801,104 - PS417_03485 0.81 +0.6 801,104 - PS417_03485 0.81 +0.8 801,104 - PS417_03485 0.81 +0.7 801,126 - PS417_03485 0.83 -0.8 801,204 + -1.1 801,204 + -0.3 801,204 + -0.7 801,247 + -0.8
Or see this region's nucleotide sequence