Strain Fitness in Pseudomonas simiae WCS417 around PS417_03445

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03435 and PS417_03445 are separated by 566 nucleotidesPS417_03445 and PS417_03450 are separated by 191 nucleotides PS417_03435: PS417_03435 - cytochrome P450, at 790,323 to 792,323 _03435 PS417_03445: PS417_03445 - tRNA-Met, at 792,890 to 792,966 _03445 PS417_03450: PS417_03450 - RNA polymerase sigma factor, at 793,158 to 793,709 _03450 Position (kb) 792 793Strain fitness (log2 ratio) -1 0 1 2 3at 791.959 kb on + strand, within PS417_03435at 792.207 kb on + strandat 792.466 kb on - strandat 792.466 kb on - strandat 792.466 kb on - strandat 792.633 kb on + strandat 792.634 kb on - strandat 792.634 kb on - strandat 793.235 kb on + strand, within PS417_03450at 793.294 kb on + strand, within PS417_03450at 793.488 kb on - strand, within PS417_03450at 793.555 kb on + strand, within PS417_03450at 793.727 kb on - strandat 793.762 kb on + strandat 793.856 kb on + strandat 793.856 kb on + strandat 793.856 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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791,959 + PS417_03435 0.82 -0.8
792,207 + -1.0
792,466 - +3.7
792,466 - -0.1
792,466 - -0.4
792,633 + +0.3
792,634 - +1.9
792,634 - -0.4
793,235 + PS417_03450 0.14 -0.3
793,294 + PS417_03450 0.25 -0.6
793,488 - PS417_03450 0.60 +1.1
793,555 + PS417_03450 0.72 +0.5
793,727 - +0.8
793,762 + -0.3
793,856 + -1.4
793,856 + -0.8
793,856 + +1.3

Or see this region's nucleotide sequence