Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03295 and PS417_03300 overlap by 8 nucleotides PS417_03300 and PS417_03305 are separated by 120 nucleotides PS417_03305 and PS417_03310 are separated by 139 nucleotides PS417_03310 and PS417_03315 overlap by 4 nucleotides
PS417_03295: PS417_03295 - energy transducer TonB, at 756,343 to 757,128
_03295
PS417_03300: PS417_03300 - alanine acetyltransferase, at 757,121 to 757,573
_03300
PS417_03305: PS417_03305 - HPr, at 757,694 to 758,098
_03305
PS417_03310: PS417_03310 - carbonate dehydratase, at 758,238 to 758,882
_03310
PS417_03315: PS417_03315 - hypothetical protein, at 758,879 to 759,406
_03315
Position (kb) 757
758
759 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 757.134 kb on + strand at 757.245 kb on - strand, within PS417_03300 at 757.338 kb on + strand, within PS417_03300 at 757.469 kb on + strand, within PS417_03300 at 757.470 kb on - strand, within PS417_03300 at 757.512 kb on - strand, within PS417_03300 at 757.512 kb on - strand, within PS417_03300 at 757.515 kb on - strand, within PS417_03300 at 758.123 kb on + strand at 758.125 kb on + strand at 758.125 kb on + strand at 758.125 kb on + strand at 758.126 kb on - strand at 758.126 kb on - strand at 758.126 kb on - strand at 758.248 kb on + strand at 758.248 kb on + strand at 758.347 kb on - strand, within PS417_03310 at 758.347 kb on - strand, within PS417_03310 at 758.532 kb on + strand, within PS417_03310 at 758.617 kb on - strand, within PS417_03310 at 758.619 kb on + strand, within PS417_03310 at 758.781 kb on + strand, within PS417_03310 at 758.782 kb on - strand, within PS417_03310 at 758.782 kb on - strand, within PS417_03310 at 758.880 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 757,134 + -0.8 757,245 - PS417_03300 0.27 +1.0 757,338 + PS417_03300 0.48 -0.3 757,469 + PS417_03300 0.77 +0.0 757,470 - PS417_03300 0.77 -0.1 757,512 - PS417_03300 0.86 -1.5 757,512 - PS417_03300 0.86 +0.0 757,515 - PS417_03300 0.87 +0.9 758,123 + +1.8 758,125 + +0.4 758,125 + -1.8 758,125 + -0.6 758,126 - -1.2 758,126 - +0.9 758,126 - -1.1 758,248 + +0.2 758,248 + -2.4 758,347 - PS417_03310 0.17 +1.5 758,347 - PS417_03310 0.17 -4.2 758,532 + PS417_03310 0.46 -2.7 758,617 - PS417_03310 0.59 -0.9 758,619 + PS417_03310 0.59 +0.4 758,781 + PS417_03310 0.84 -5.0 758,782 - PS417_03310 0.84 +0.1 758,782 - PS417_03310 0.84 -1.5 758,880 + +0.0
Or see this region's nucleotide sequence