Strain Fitness in Pseudomonas simiae WCS417 around PS417_03255

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03250 and PS417_03255 are separated by 502 nucleotidesPS417_03255 and PS417_03260 are separated by 139 nucleotidesPS417_03260 and PS417_03265 are separated by 158 nucleotides PS417_03250: PS417_03250 - methylmalonate-semialdehyde dehydrogenase, at 742,428 to 743,924 _03250 PS417_03255: PS417_03255 - 23S ribosomal RNA, at 744,427 to 747,342 _03255 PS417_03260: PS417_03260 - 5S ribosomal RNA, at 747,482 to 747,597 _03260 PS417_03265: PS417_03265 - paraquat-inducible protein A, at 747,756 to 748,415 _03265 Position (kb) 744 745 746 747 748Strain fitness (log2 ratio) -2 -1 0 1 2at 743.430 kb on + strand, within PS417_03250at 743.430 kb on + strand, within PS417_03250at 743.430 kb on + strand, within PS417_03250at 743.431 kb on - strand, within PS417_03250at 743.431 kb on - strand, within PS417_03250at 743.431 kb on - strand, within PS417_03250at 743.431 kb on - strand, within PS417_03250at 743.431 kb on - strand, within PS417_03250at 743.432 kb on + strand, within PS417_03250at 743.432 kb on + strand, within PS417_03250at 743.434 kb on + strand, within PS417_03250at 743.434 kb on + strand, within PS417_03250at 743.434 kb on + strand, within PS417_03250at 743.434 kb on + strand, within PS417_03250at 743.434 kb on + strand, within PS417_03250at 743.434 kb on + strand, within PS417_03250at 743.435 kb on - strand, within PS417_03250at 743.435 kb on - strand, within PS417_03250at 743.435 kb on - strand, within PS417_03250at 743.435 kb on - strand, within PS417_03250at 743.435 kb on - strand, within PS417_03250at 743.562 kb on + strand, within PS417_03250at 743.562 kb on + strand, within PS417_03250at 743.563 kb on - strand, within PS417_03250at 743.672 kb on + strand, within PS417_03250at 743.814 kb on + strandat 743.838 kb on + strandat 743.838 kb on + strandat 743.838 kb on + strandat 743.838 kb on + strandat 743.912 kb on + strandat 743.913 kb on - strandat 743.922 kb on + strandat 743.923 kb on - strandat 743.923 kb on - strandat 743.931 kb on + strandat 743.931 kb on + strandat 743.932 kb on - strandat 743.996 kb on + strandat 744.034 kb on - strandat 747.582 kb on + strand, within PS417_03260at 747.582 kb on + strand, within PS417_03260at 747.694 kb on + strandat 747.694 kb on + strandat 747.713 kb on + strandat 747.713 kb on + strandat 747.714 kb on - strandat 747.714 kb on - strandat 747.714 kb on - strandat 747.714 kb on - strandat 747.719 kb on - strandat 747.751 kb on + strandat 747.755 kb on + strandat 747.755 kb on + strandat 747.755 kb on + strandat 747.755 kb on + strandat 747.756 kb on - strandat 747.756 kb on - strandat 747.756 kb on - strandat 747.898 kb on + strand, within PS417_03265at 747.899 kb on - strand, within PS417_03265at 747.899 kb on - strand, within PS417_03265at 747.899 kb on - strand, within PS417_03265at 747.901 kb on - strand, within PS417_03265at 747.963 kb on + strand, within PS417_03265at 747.964 kb on - strand, within PS417_03265at 748.003 kb on + strand, within PS417_03265at 748.004 kb on - strand, within PS417_03265at 748.004 kb on - strand, within PS417_03265at 748.087 kb on + strand, within PS417_03265at 748.176 kb on + strand, within PS417_03265at 748.177 kb on - strand, within PS417_03265at 748.200 kb on + strand, within PS417_03265at 748.201 kb on - strand, within PS417_03265at 748.201 kb on - strand, within PS417_03265at 748.324 kb on + strand, within PS417_03265

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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743,430 + PS417_03250 0.67 -1.0
743,430 + PS417_03250 0.67 +0.6
743,430 + PS417_03250 0.67 +1.3
743,431 - PS417_03250 0.67 -0.4
743,431 - PS417_03250 0.67 -1.7
743,431 - PS417_03250 0.67 -2.2
743,431 - PS417_03250 0.67 -0.7
743,431 - PS417_03250 0.67 -0.7
743,432 + PS417_03250 0.67 +0.6
743,432 + PS417_03250 0.67 -1.2
743,434 + PS417_03250 0.67 -1.4
743,434 + PS417_03250 0.67 -1.1
743,434 + PS417_03250 0.67 +1.1
743,434 + PS417_03250 0.67 +0.3
743,434 + PS417_03250 0.67 -0.7
743,434 + PS417_03250 0.67 -2.5
743,435 - PS417_03250 0.67 +0.6
743,435 - PS417_03250 0.67 -1.4
743,435 - PS417_03250 0.67 +0.3
743,435 - PS417_03250 0.67 +0.5
743,435 - PS417_03250 0.67 +0.2
743,562 + PS417_03250 0.76 -0.9
743,562 + PS417_03250 0.76 -0.8
743,563 - PS417_03250 0.76 -0.2
743,672 + PS417_03250 0.83 -0.2
743,814 + -0.1
743,838 + +0.5
743,838 + -0.5
743,838 + -2.2
743,838 + +2.1
743,912 + -2.0
743,913 - -0.8
743,922 + +1.1
743,923 - -0.3
743,923 - -0.2
743,931 + -1.5
743,931 + +1.3
743,932 - -1.7
743,996 + -0.9
744,034 - +0.7
747,582 + PS417_03260 0.86 +1.3
747,582 + PS417_03260 0.86 -1.3
747,694 + +1.8
747,694 + +0.7
747,713 + +0.2
747,713 + -0.4
747,714 - +1.1
747,714 - +0.9
747,714 - -0.4
747,714 - -0.3
747,719 - -0.7
747,751 + +0.9
747,755 + +0.1
747,755 + +1.3
747,755 + -0.7
747,755 + +0.7
747,756 - -1.0
747,756 - -0.6
747,756 - -1.1
747,898 + PS417_03265 0.22 -0.9
747,899 - PS417_03265 0.22 -0.4
747,899 - PS417_03265 0.22 +0.2
747,899 - PS417_03265 0.22 +1.1
747,901 - PS417_03265 0.22 -0.3
747,963 + PS417_03265 0.31 -1.1
747,964 - PS417_03265 0.32 -1.0
748,003 + PS417_03265 0.37 +0.8
748,004 - PS417_03265 0.38 -0.4
748,004 - PS417_03265 0.38 +1.2
748,087 + PS417_03265 0.50 +1.3
748,176 + PS417_03265 0.64 -0.8
748,177 - PS417_03265 0.64 -0.2
748,200 + PS417_03265 0.67 -0.8
748,201 - PS417_03265 0.67 +1.5
748,201 - PS417_03265 0.67 +0.3
748,324 + PS417_03265 0.86 -1.6

Or see this region's nucleotide sequence