Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03175 and PS417_03180 are separated by 8 nucleotides PS417_03180 and PS417_03185 are separated by 146 nucleotides
PS417_03175: PS417_03175 - major facilitator transporter, at 727,788 to 728,981
_03175
PS417_03180: PS417_03180 - hypothetical protein, at 728,990 to 729,172
_03180
PS417_03185: PS417_03185 - NADPH:quinone reductase, at 729,319 to 730,332
_03185
Position (kb) 728
729
730 Strain fitness (log2 ratio) -2
-1
0
1
2 at 728.409 kb on + strand, within PS417_03175 at 728.409 kb on + strand, within PS417_03175 at 728.409 kb on + strand, within PS417_03175 at 728.409 kb on + strand, within PS417_03175 at 728.460 kb on + strand, within PS417_03175 at 728.497 kb on - strand, within PS417_03175 at 728.553 kb on - strand, within PS417_03175 at 728.553 kb on - strand, within PS417_03175 at 728.631 kb on + strand, within PS417_03175 at 728.711 kb on + strand, within PS417_03175 at 728.711 kb on + strand, within PS417_03175 at 728.747 kb on + strand, within PS417_03175 at 728.955 kb on - strand at 729.131 kb on - strand, within PS417_03180 at 729.189 kb on + strand at 729.216 kb on + strand at 729.216 kb on + strand at 729.218 kb on + strand at 729.219 kb on - strand at 729.264 kb on + strand at 729.292 kb on + strand at 729.312 kb on + strand at 729.312 kb on + strand at 729.312 kb on + strand at 729.313 kb on - strand at 729.522 kb on - strand, within PS417_03185 at 729.522 kb on - strand at 729.996 kb on + strand, within PS417_03185 at 729.997 kb on - strand, within PS417_03185 at 729.997 kb on - strand, within PS417_03185 at 730.024 kb on - strand, within PS417_03185 at 730.068 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 728,409 + PS417_03175 0.52 -1.8 728,409 + PS417_03175 0.52 +0.4 728,409 + PS417_03175 0.52 +0.3 728,409 + PS417_03175 0.52 +0.3 728,460 + PS417_03175 0.56 -0.0 728,497 - PS417_03175 0.59 +0.4 728,553 - PS417_03175 0.64 -1.6 728,553 - PS417_03175 0.64 +0.4 728,631 + PS417_03175 0.71 -0.8 728,711 + PS417_03175 0.77 +0.1 728,711 + PS417_03175 0.77 -0.5 728,747 + PS417_03175 0.80 +0.3 728,955 - -0.8 729,131 - PS417_03180 0.77 -0.8 729,189 + +0.4 729,216 + +2.7 729,216 + -0.6 729,218 + -1.6 729,219 - +0.4 729,264 + -0.0 729,292 + -0.1 729,312 + +0.6 729,312 + +1.3 729,312 + -0.2 729,313 - -0.6 729,522 - PS417_03185 0.20 -1.1 729,522 - +0.9 729,996 + PS417_03185 0.67 -1.2 729,997 - PS417_03185 0.67 +0.2 729,997 - PS417_03185 0.67 +1.8 730,024 - PS417_03185 0.70 -0.9 730,068 - PS417_03185 0.74 -0.0 730,148 - PS417_03185 0.82 +0.3 730,148 - PS417_03185 0.82 -0.2 730,148 - PS417_03185 0.82 +1.2
Or see this region's nucleotide sequence