Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03105 and PS417_03110 are separated by 19 nucleotides PS417_03110 and PS417_03115 are separated by 332 nucleotides PS417_03115 and PS417_03120 are separated by 58 nucleotides
PS417_03105: PS417_03105 - secretin, at 712,564 to 713,781
_03105
PS417_03110: PS417_03110 - pilus assembly protein CpaB, at 713,801 to 714,742
_03110
PS417_03115: PS417_03115 - pilus assembly protein, at 715,075 to 715,266
_03115
PS417_03120: PS417_03120 - histidine kinase, at 715,325 to 715,729
_03120
Position (kb) 713
714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 712.944 kb on - strand, within PS417_03105 at 712.944 kb on - strand, within PS417_03105 at 713.039 kb on + strand, within PS417_03105 at 713.039 kb on + strand, within PS417_03105 at 713.040 kb on - strand, within PS417_03105 at 713.647 kb on + strand, within PS417_03105 at 713.647 kb on + strand, within PS417_03105 at 713.648 kb on - strand, within PS417_03105 at 713.925 kb on + strand, within PS417_03110 at 714.066 kb on - strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.289 kb on - strand, within PS417_03110 at 714.445 kb on + strand, within PS417_03110 at 714.535 kb on + strand, within PS417_03110 at 714.665 kb on + strand at 714.796 kb on - strand at 714.824 kb on + strand at 714.846 kb on + strand at 714.846 kb on + strand at 714.948 kb on + strand at 714.959 kb on + strand at 714.970 kb on + strand at 715.029 kb on + strand at 715.029 kb on + strand at 715.029 kb on + strand at 715.033 kb on - strand at 715.033 kb on - strand at 715.102 kb on + strand, within PS417_03115 at 715.102 kb on + strand, within PS417_03115 at 715.102 kb on + strand, within PS417_03115 at 715.102 kb on + strand, within PS417_03115 at 715.102 kb on + strand, within PS417_03115 at 715.103 kb on - strand, within PS417_03115 at 715.131 kb on + strand, within PS417_03115 at 715.132 kb on - strand, within PS417_03115 at 715.278 kb on + strand at 715.278 kb on + strand at 715.278 kb on + strand at 715.279 kb on - strand at 715.279 kb on - strand at 715.279 kb on - strand at 715.511 kb on - strand, within PS417_03120 at 715.511 kb on - strand, within PS417_03120 at 715.511 kb on - strand, within PS417_03120 at 715.624 kb on + strand, within PS417_03120 at 715.625 kb on - strand, within PS417_03120 at 715.667 kb on + strand, within PS417_03120 at 715.667 kb on + strand, within PS417_03120
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 712,944 - PS417_03105 0.31 +1.1 712,944 - PS417_03105 0.31 +1.1 713,039 + PS417_03105 0.39 +1.9 713,039 + PS417_03105 0.39 +3.0 713,040 - PS417_03105 0.39 +1.1 713,647 + PS417_03105 0.89 +1.1 713,647 + PS417_03105 0.89 -1.2 713,648 - PS417_03105 0.89 +0.7 713,925 + PS417_03110 0.13 +1.3 714,066 - PS417_03110 0.28 +2.1 714,278 + PS417_03110 0.51 +0.9 714,278 + PS417_03110 0.51 +1.0 714,278 + PS417_03110 0.51 +0.6 714,278 + PS417_03110 0.51 +1.0 714,278 + PS417_03110 0.51 +0.3 714,278 + PS417_03110 0.51 +0.5 714,278 + PS417_03110 0.51 -0.1 714,278 + PS417_03110 0.51 +1.7 714,279 - PS417_03110 0.51 +2.4 714,279 - PS417_03110 0.51 +0.6 714,279 - PS417_03110 0.51 -0.7 714,279 - PS417_03110 0.51 -0.0 714,279 - PS417_03110 0.51 +2.0 714,289 - PS417_03110 0.52 +2.5 714,445 + PS417_03110 0.68 +0.7 714,535 + PS417_03110 0.78 -0.3 714,665 + -0.2 714,796 - +0.0 714,824 + +0.8 714,846 + +1.2 714,846 + -0.0 714,948 + +5.1 714,959 + +3.0 714,970 + +2.1 715,029 + +0.3 715,029 + -0.2 715,029 + -0.4 715,033 - +0.5 715,033 - +0.1 715,102 + PS417_03115 0.14 +1.6 715,102 + PS417_03115 0.14 +0.7 715,102 + PS417_03115 0.14 +0.5 715,102 + PS417_03115 0.14 +1.0 715,102 + PS417_03115 0.14 -0.8 715,103 - PS417_03115 0.15 -0.8 715,131 + PS417_03115 0.29 -3.5 715,132 - PS417_03115 0.30 +0.7 715,278 + +0.2 715,278 + +0.7 715,278 + -0.8 715,279 - -2.4 715,279 - -1.0 715,279 - -1.3 715,511 - PS417_03120 0.46 -0.6 715,511 - PS417_03120 0.46 -0.6 715,511 - PS417_03120 0.46 -0.2 715,624 + PS417_03120 0.74 +0.4 715,625 - PS417_03120 0.74 +0.5 715,667 + PS417_03120 0.84 +1.1 715,667 + PS417_03120 0.84 -0.6
Or see this region's nucleotide sequence