Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03100 and PS417_03105 overlap by 4 nucleotides PS417_03105 and PS417_03110 are separated by 19 nucleotides
PS417_03100: PS417_03100 - pilus assembly protein, at 711,374 to 712,567
_03100
PS417_03105: PS417_03105 - secretin, at 712,564 to 713,781
_03105
PS417_03110: PS417_03110 - pilus assembly protein CpaB, at 713,801 to 714,742
_03110
Position (kb) 712
713
714 Strain fitness (log2 ratio) -1
0
1
2
3 at 712.403 kb on + strand, within PS417_03100 at 712.404 kb on - strand, within PS417_03100 at 712.582 kb on - strand at 712.637 kb on + strand at 712.637 kb on + strand at 712.944 kb on - strand, within PS417_03105 at 712.944 kb on - strand, within PS417_03105 at 713.039 kb on + strand, within PS417_03105 at 713.039 kb on + strand, within PS417_03105 at 713.040 kb on - strand, within PS417_03105 at 713.647 kb on + strand, within PS417_03105 at 713.647 kb on + strand, within PS417_03105 at 713.648 kb on - strand, within PS417_03105 at 713.925 kb on + strand, within PS417_03110 at 714.066 kb on - strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.289 kb on - strand, within PS417_03110 at 714.445 kb on + strand, within PS417_03110 at 714.535 kb on + strand, within PS417_03110 at 714.665 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 712,403 + PS417_03100 0.86 -0.5 712,404 - PS417_03100 0.86 +0.2 712,582 - +1.7 712,637 + +1.4 712,637 + +0.2 712,944 - PS417_03105 0.31 +1.1 712,944 - PS417_03105 0.31 +1.1 713,039 + PS417_03105 0.39 +1.9 713,039 + PS417_03105 0.39 +3.0 713,040 - PS417_03105 0.39 +1.1 713,647 + PS417_03105 0.89 +1.1 713,647 + PS417_03105 0.89 -1.2 713,648 - PS417_03105 0.89 +0.7 713,925 + PS417_03110 0.13 +1.3 714,066 - PS417_03110 0.28 +2.1 714,278 + PS417_03110 0.51 +0.9 714,278 + PS417_03110 0.51 +1.0 714,278 + PS417_03110 0.51 +0.6 714,278 + PS417_03110 0.51 +1.0 714,278 + PS417_03110 0.51 +0.3 714,278 + PS417_03110 0.51 +0.5 714,278 + PS417_03110 0.51 -0.1 714,278 + PS417_03110 0.51 +1.7 714,279 - PS417_03110 0.51 +2.4 714,279 - PS417_03110 0.51 +0.6 714,279 - PS417_03110 0.51 -0.7 714,279 - PS417_03110 0.51 -0.0 714,279 - PS417_03110 0.51 +2.0 714,289 - PS417_03110 0.52 +2.5 714,445 + PS417_03110 0.68 +0.7 714,535 + PS417_03110 0.78 -0.3 714,665 + -0.2
Or see this region's nucleotide sequence