Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03075 and PS417_03080 are separated by 10 nucleotides PS417_03080 and PS417_03085 are separated by 10 nucleotides PS417_03085 and PS417_03090 are separated by 1 nucleotides PS417_03090 and PS417_03095 are separated by 10 nucleotides
PS417_03075: PS417_03075 - hypothetical protein, at 707,321 to 707,593
_03075
PS417_03080: PS417_03080 - hypothetical protein, at 707,604 to 708,314
_03080
PS417_03085: PS417_03085 - type II secretion system protein F, at 708,325 to 709,212
_03085
PS417_03090: PS417_03090 - type II secretion system protein F, at 709,214 to 710,095
_03090
PS417_03095: PS417_03095 - ATPase, at 710,106 to 711,377
_03095
Position (kb) 708
709
710 Strain fitness (log2 ratio) -1
0
1
2
3 at 707.326 kb on + strand at 707.326 kb on + strand at 707.326 kb on + strand at 707.327 kb on - strand at 707.327 kb on - strand at 707.327 kb on - strand at 707.329 kb on + strand at 707.329 kb on + strand at 707.330 kb on - strand at 707.394 kb on + strand, within PS417_03075 at 707.394 kb on + strand, within PS417_03075 at 707.395 kb on - strand, within PS417_03075 at 707.395 kb on - strand, within PS417_03075 at 707.580 kb on + strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.605 kb on + strand at 707.767 kb on + strand, within PS417_03080 at 708.038 kb on - strand, within PS417_03080 at 708.038 kb on - strand, within PS417_03080 at 708.446 kb on + strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.649 kb on + strand, within PS417_03085 at 708.649 kb on + strand, within PS417_03085 at 708.833 kb on + strand, within PS417_03085 at 709.323 kb on + strand, within PS417_03090 at 709.324 kb on - strand, within PS417_03090 at 709.324 kb on - strand, within PS417_03090 at 709.324 kb on - strand, within PS417_03090 at 709.348 kb on - strand, within PS417_03090 at 709.384 kb on - strand, within PS417_03090 at 709.549 kb on - strand, within PS417_03090 at 709.741 kb on + strand at 709.742 kb on - strand, within PS417_03090 at 709.776 kb on + strand, within PS417_03090 at 709.777 kb on - strand, within PS417_03090 at 710.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 707,326 + +0.7 707,326 + +0.8 707,326 + -0.3 707,327 - +0.9 707,327 - +0.6 707,327 - +1.8 707,329 + +0.8 707,329 + +2.5 707,330 - -0.0 707,394 + PS417_03075 0.27 +0.9 707,394 + PS417_03075 0.27 +0.6 707,395 - PS417_03075 0.27 +1.3 707,395 - PS417_03075 0.27 -0.0 707,580 + +1.0 707,581 - +0.1 707,581 - +0.3 707,581 - +2.0 707,605 + +1.0 707,767 + PS417_03080 0.23 +2.0 708,038 - PS417_03080 0.61 +1.9 708,038 - PS417_03080 0.61 +2.9 708,446 + PS417_03085 0.14 +1.9 708,447 - PS417_03085 0.14 +0.3 708,447 - PS417_03085 0.14 +0.5 708,447 - PS417_03085 0.14 +0.7 708,447 - PS417_03085 0.14 +1.0 708,649 + PS417_03085 0.36 -0.8 708,649 + PS417_03085 0.36 -0.4 708,833 + PS417_03085 0.57 +1.7 709,323 + PS417_03090 0.12 +1.0 709,324 - PS417_03090 0.12 +0.8 709,324 - PS417_03090 0.12 +0.2 709,324 - PS417_03090 0.12 +1.0 709,348 - PS417_03090 0.15 -0.2 709,384 - PS417_03090 0.19 -0.4 709,549 - PS417_03090 0.38 +3.5 709,741 + +1.5 709,742 - PS417_03090 0.60 +3.1 709,776 + PS417_03090 0.64 +1.9 709,777 - PS417_03090 0.64 -0.3 710,208 - +0.8
Or see this region's nucleotide sequence