Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03040 and PS417_03045 are separated by 45 nucleotides PS417_03045 and PS417_03050 are separated by 155 nucleotides PS417_03050 and PS417_03055 overlap by 4 nucleotides
PS417_03040: PS417_03040 - hypothetical protein, at 699,418 to 700,020
_03040
PS417_03045: PS417_03045 - hypothetical protein, at 700,066 to 700,623
_03045
PS417_03050: PS417_03050 - hypothetical protein, at 700,779 to 702,725
_03050
PS417_03055: PS417_03055 - histidine kinase, at 702,722 to 705,448
_03055
Position (kb) 700
701
702
703 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 699.826 kb on + strand, within PS417_03040 at 699.826 kb on + strand, within PS417_03040 at 699.826 kb on + strand, within PS417_03040 at 699.827 kb on - strand, within PS417_03040 at 699.853 kb on + strand, within PS417_03040 at 699.853 kb on + strand, within PS417_03040 at 699.853 kb on + strand, within PS417_03040 at 699.854 kb on - strand, within PS417_03040 at 699.854 kb on - strand, within PS417_03040 at 700.084 kb on - strand at 700.381 kb on + strand, within PS417_03045 at 700.432 kb on + strand, within PS417_03045 at 700.689 kb on + strand at 700.690 kb on - strand at 700.735 kb on - strand at 700.735 kb on - strand at 700.735 kb on - strand at 700.750 kb on + strand at 700.750 kb on + strand at 700.751 kb on - strand at 700.751 kb on - strand at 700.859 kb on + strand at 700.860 kb on - strand at 700.917 kb on - strand at 700.989 kb on + strand, within PS417_03050 at 701.418 kb on + strand, within PS417_03050 at 701.573 kb on + strand, within PS417_03050 at 701.609 kb on - strand, within PS417_03050 at 701.946 kb on - strand, within PS417_03050 at 701.946 kb on - strand, within PS417_03050 at 702.053 kb on + strand, within PS417_03050 at 702.054 kb on - strand, within PS417_03050 at 702.093 kb on + strand, within PS417_03050 at 702.093 kb on + strand, within PS417_03050 at 702.093 kb on + strand, within PS417_03050 at 702.094 kb on - strand, within PS417_03050 at 702.094 kb on - strand, within PS417_03050 at 702.094 kb on - strand, within PS417_03050 at 702.155 kb on + strand, within PS417_03050 at 702.207 kb on + strand, within PS417_03050 at 702.207 kb on + strand, within PS417_03050 at 702.208 kb on - strand, within PS417_03050 at 702.383 kb on + strand, within PS417_03050 at 702.383 kb on + strand, within PS417_03050 at 702.384 kb on - strand, within PS417_03050 at 702.384 kb on - strand, within PS417_03050 at 702.476 kb on + strand, within PS417_03050 at 702.476 kb on + strand, within PS417_03050 at 702.501 kb on + strand, within PS417_03050 at 702.501 kb on + strand, within PS417_03050 at 702.501 kb on + strand, within PS417_03050 at 702.502 kb on - strand, within PS417_03050 at 702.502 kb on - strand, within PS417_03050 at 702.502 kb on - strand, within PS417_03050 at 702.502 kb on - strand, within PS417_03050 at 702.502 kb on - strand, within PS417_03050 at 702.502 kb on - strand, within PS417_03050 at 702.502 kb on - strand, within PS417_03050 at 702.505 kb on + strand, within PS417_03050 at 702.549 kb on - strand at 702.712 kb on - strand at 702.723 kb on + strand at 702.888 kb on - strand at 702.900 kb on - strand at 703.222 kb on + strand, within PS417_03055 at 703.223 kb on - strand, within PS417_03055 at 703.223 kb on - strand, within PS417_03055 at 703.478 kb on + strand, within PS417_03055 at 703.695 kb on + strand, within PS417_03055 at 703.696 kb on - strand, within PS417_03055 at 703.696 kb on - strand, within PS417_03055
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 699,826 + PS417_03040 0.68 -0.5 699,826 + PS417_03040 0.68 +0.6 699,826 + PS417_03040 0.68 -0.3 699,827 - PS417_03040 0.68 +0.2 699,853 + PS417_03040 0.72 -1.4 699,853 + PS417_03040 0.72 -1.7 699,853 + PS417_03040 0.72 -1.6 699,854 - PS417_03040 0.72 +0.3 699,854 - PS417_03040 0.72 -1.7 700,084 - -1.1 700,381 + PS417_03045 0.56 -2.2 700,432 + PS417_03045 0.66 -1.6 700,689 + +0.0 700,690 - +1.5 700,735 - -0.8 700,735 - +0.5 700,735 - -1.0 700,750 + -0.4 700,750 + +2.2 700,751 - +0.5 700,751 - +0.8 700,859 + +1.2 700,860 - +1.3 700,917 - +1.4 700,989 + PS417_03050 0.11 +2.0 701,418 + PS417_03050 0.33 +0.3 701,573 + PS417_03050 0.41 +0.9 701,609 - PS417_03050 0.43 +0.7 701,946 - PS417_03050 0.60 +0.8 701,946 - PS417_03050 0.60 -0.2 702,053 + PS417_03050 0.65 +1.3 702,054 - PS417_03050 0.65 -1.7 702,093 + PS417_03050 0.67 +1.9 702,093 + PS417_03050 0.67 +1.0 702,093 + PS417_03050 0.67 +2.8 702,094 - PS417_03050 0.68 +0.2 702,094 - PS417_03050 0.68 +0.7 702,094 - PS417_03050 0.68 -1.4 702,155 + PS417_03050 0.71 +0.5 702,207 + PS417_03050 0.73 -0.6 702,207 + PS417_03050 0.73 -0.7 702,208 - PS417_03050 0.73 +2.0 702,383 + PS417_03050 0.82 -0.4 702,383 + PS417_03050 0.82 +1.3 702,384 - PS417_03050 0.82 +4.0 702,384 - PS417_03050 0.82 +0.5 702,476 + PS417_03050 0.87 +0.4 702,476 + PS417_03050 0.87 +0.8 702,501 + PS417_03050 0.88 +1.3 702,501 + PS417_03050 0.88 +1.9 702,501 + PS417_03050 0.88 -0.6 702,502 - PS417_03050 0.88 +0.7 702,502 - PS417_03050 0.88 +0.8 702,502 - PS417_03050 0.88 +1.3 702,502 - PS417_03050 0.88 +0.7 702,502 - PS417_03050 0.88 +2.3 702,502 - PS417_03050 0.88 -3.0 702,502 - PS417_03050 0.88 +0.9 702,505 + PS417_03050 0.89 +0.5 702,549 - +0.7 702,712 - +0.7 702,723 + -1.7 702,888 - +1.3 702,900 - +1.3 703,222 + PS417_03055 0.18 -0.3 703,223 - PS417_03055 0.18 -0.4 703,223 - PS417_03055 0.18 +0.7 703,478 + PS417_03055 0.28 +0.1 703,695 + PS417_03055 0.36 +0.3 703,696 - PS417_03055 0.36 +0.1 703,696 - PS417_03055 0.36 +0.6
Or see this region's nucleotide sequence