Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02960 and PS417_02965 are separated by 279 nucleotides PS417_02965 and PS417_02970 are separated by 17 nucleotides PS417_02970 and PS417_02975 are separated by 24 nucleotides
PS417_02960: PS417_02960 - ribosomal protein L11 methyltransferase, at 676,707 to 677,585
_02960
PS417_02965: PS417_02965 - acetyl-CoA carboxylase, at 677,865 to 679,226
_02965
PS417_02970: PS417_02970 - acetyl-CoA carboxylase, at 679,244 to 679,708
_02970
PS417_02975: PS417_02975 - 3-dehydroquinate dehydratase, at 679,733 to 680,188
_02975
Position (kb) 677
678
679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 676.911 kb on + strand, within PS417_02960 at 676.912 kb on - strand, within PS417_02960 at 676.948 kb on + strand, within PS417_02960 at 676.949 kb on - strand, within PS417_02960 at 677.534 kb on - strand at 677.534 kb on - strand at 677.534 kb on - strand at 677.534 kb on - strand at 677.788 kb on + strand at 677.867 kb on - strand at 679.843 kb on - strand, within PS417_02975 at 679.952 kb on - strand, within PS417_02975 at 679.976 kb on - strand, within PS417_02975 at 680.046 kb on + strand, within PS417_02975 at 680.047 kb on - strand, within PS417_02975
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 676,911 + PS417_02960 0.23 -2.1 676,912 - PS417_02960 0.23 -0.8 676,948 + PS417_02960 0.27 -0.6 676,949 - PS417_02960 0.28 -0.6 677,534 - -0.2 677,534 - -1.1 677,534 - -0.4 677,534 - +0.6 677,788 + +2.0 677,867 - -0.2 679,843 - PS417_02975 0.24 -2.1 679,952 - PS417_02975 0.48 -1.3 679,976 - PS417_02975 0.53 -0.9 680,046 + PS417_02975 0.69 -0.8 680,047 - PS417_02975 0.69 -3.4
Or see this region's nucleotide sequence