Strain Fitness in Pseudomonas simiae WCS417 around PS417_02940

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02935 and PS417_02940 are separated by 174 nucleotidesPS417_02940 and PS417_02945 are separated by 82 nucleotidesPS417_02945 and PS417_02950 overlap by 4 nucleotides PS417_02935: PS417_02935 - phosphoribosylamine--glycine ligase, at 670,789 to 672,081 _02935 PS417_02940: PS417_02940 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 672,256 to 673,863 _02940 PS417_02945: PS417_02945 - Fis family transcriptional regulator, at 673,946 to 674,266 _02945 PS417_02950: PS417_02950 - tRNA-dihydrouridine synthase B, at 674,263 to 675,276 _02950 Position (kb) 672 673 674Strain fitness (log2 ratio) -2 -1 0 1at 674.441 kb on - strand, within PS417_02950at 674.441 kb on - strand, within PS417_02950at 674.460 kb on - strand, within PS417_02950

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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674,441 - PS417_02950 0.18 -2.1
674,441 - PS417_02950 0.18 -0.7
674,460 - PS417_02950 0.19 -0.5

Or see this region's nucleotide sequence