Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02895 and PS417_02900 are separated by 38 nucleotides PS417_02900 and PS417_02905 overlap by 8 nucleotides PS417_02905 and PS417_02910 overlap by 1 nucleotides
PS417_02895: PS417_02895 - precorrin-6Y C5,15-methyltransferase, at 660,567 to 661,772
_02895
PS417_02900: PS417_02900 - oxidoreductase, at 661,811 to 663,157
_02900
PS417_02905: PS417_02905 - precorrin isomerase, at 663,150 to 663,776
_02905
PS417_02910: PS417_02910 - precorrin-2 C20-methyltransferase, at 663,776 to 664,507
_02910
Position (kb) 661
662
663
664 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 661.334 kb on + strand, within PS417_02895 at 661.334 kb on + strand, within PS417_02895 at 661.532 kb on - strand, within PS417_02895 at 661.676 kb on + strand at 661.750 kb on - strand at 661.750 kb on - strand at 661.772 kb on + strand at 661.772 kb on + strand at 661.773 kb on - strand at 661.777 kb on - strand at 661.777 kb on - strand at 661.777 kb on - strand at 661.777 kb on - strand at 661.777 kb on - strand at 661.834 kb on - strand at 661.834 kb on - strand at 661.892 kb on - strand at 662.027 kb on + strand, within PS417_02900 at 662.651 kb on + strand, within PS417_02900 at 663.044 kb on + strand at 663.101 kb on - strand at 663.160 kb on - strand at 664.008 kb on - strand, within PS417_02910 at 664.124 kb on + strand, within PS417_02910 at 664.125 kb on - strand, within PS417_02910 at 664.125 kb on - strand, within PS417_02910 at 664.130 kb on + strand, within PS417_02910 at 664.130 kb on + strand, within PS417_02910
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 661,334 + PS417_02895 0.64 +0.5 661,334 + PS417_02895 0.64 -1.0 661,532 - PS417_02895 0.80 -2.0 661,676 + +0.1 661,750 - -2.0 661,750 - -0.9 661,772 + +0.3 661,772 + -0.4 661,773 - -0.4 661,777 - -0.5 661,777 - -0.5 661,777 - -0.1 661,777 - -0.8 661,777 - -0.5 661,834 - +1.5 661,834 - -1.4 661,892 - -0.3 662,027 + PS417_02900 0.16 -0.5 662,651 + PS417_02900 0.62 -1.0 663,044 + -4.0 663,101 - -0.1 663,160 - -1.6 664,008 - PS417_02910 0.32 +1.2 664,124 + PS417_02910 0.48 -0.7 664,125 - PS417_02910 0.48 +0.1 664,125 - PS417_02910 0.48 -0.4 664,130 + PS417_02910 0.48 -1.2 664,130 + PS417_02910 0.48 +1.0
Or see this region's nucleotide sequence