Strain Fitness in Pseudomonas simiae WCS417 around PS417_28550

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28545 and PS417_28550 are separated by 333 nucleotidesPS417_28550 and PS417_28555 are separated by 49 nucleotides PS417_28545: PS417_28545 - membrane protein insertase, at 6,166,232 to 6,167,914 _28545 PS417_28550: PS417_28550 - hypothetical protein, at 6,168,248 to 6,168,526 _28550 PS417_28555: PS417_28555 - 50S ribosomal protein L34, at 6,168,576 to 6,168,710 _28555 Position (kb) 6168 6169Strain fitness (log2 ratio) -1 0 1 2at 6167.947 kb on - strandat 6168.157 kb on - strandat 6168.830 kb on - strandat 6168.830 kb on - strandat 6168.883 kb on + strandat 6168.884 kb on - strandat 6168.884 kb on - strandat 6168.888 kb on - strandat 6168.935 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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6,167,947 - -0.1
6,168,157 - -0.4
6,168,830 - +0.2
6,168,830 - +0.3
6,168,883 + +1.4
6,168,884 - -0.5
6,168,884 - -0.1
6,168,888 - +2.2
6,168,935 - -0.2

Or see this region's nucleotide sequence