Strain Fitness in Pseudomonas simiae WCS417 around PS417_28495

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28480 and PS417_28485 are separated by 12 nucleotidesPS417_28485 and PS417_28490 are separated by 56 nucleotidesPS417_28490 and PS417_28495 are separated by 133 nucleotidesPS417_28495 and PS417_28500 are separated by 16 nucleotidesPS417_28500 and PS417_28505 are separated by 160 nucleotides PS417_28480: PS417_28480 - ATP synthase F0F1 subunit delta, at 6,153,012 to 6,153,548 _28480 PS417_28485: PS417_28485 - ATP synthase subunit B, at 6,153,561 to 6,154,031 _28485 PS417_28490: PS417_28490 - ATP synthase F0F1 subunit C, at 6,154,088 to 6,154,345 _28490 PS417_28495: PS417_28495 - ATP synthase F0F1 subunit A, at 6,154,479 to 6,155,348 _28495 PS417_28500: PS417_28500 - ATP synthase F0F1 subunit I, at 6,155,365 to 6,155,772 _28500 PS417_28505: PS417_28505 - chromosome partitioning protein ParB, at 6,155,933 to 6,156,805 _28505 Position (kb) 6154 6155 6156Strain fitness (log2 ratio) -1 0 1at 6155.850 kb on - strandat 6155.906 kb on - strandat 6155.978 kb on - strandat 6155.978 kb on - strandat 6155.978 kb on - strandat 6155.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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6,155,850 - +1.4
6,155,906 - +0.6
6,155,978 - -0.6
6,155,978 - -1.0
6,155,978 - +0.8
6,155,978 - +0.1

Or see this region's nucleotide sequence