Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28480 and PS417_28485 are separated by 12 nucleotides PS417_28485 and PS417_28490 are separated by 56 nucleotides PS417_28490 and PS417_28495 are separated by 133 nucleotides PS417_28495 and PS417_28500 are separated by 16 nucleotides PS417_28500 and PS417_28505 are separated by 160 nucleotides
PS417_28480: PS417_28480 - ATP synthase F0F1 subunit delta, at 6,153,012 to 6,153,548
_28480
PS417_28485: PS417_28485 - ATP synthase subunit B, at 6,153,561 to 6,154,031
_28485
PS417_28490: PS417_28490 - ATP synthase F0F1 subunit C, at 6,154,088 to 6,154,345
_28490
PS417_28495: PS417_28495 - ATP synthase F0F1 subunit A, at 6,154,479 to 6,155,348
_28495
PS417_28500: PS417_28500 - ATP synthase F0F1 subunit I, at 6,155,365 to 6,155,772
_28500
PS417_28505: PS417_28505 - chromosome partitioning protein ParB, at 6,155,933 to 6,156,805
_28505
Position (kb)
6154
6155
6156 Strain fitness (log2 ratio)
-1
0
1 at 6155.850 kb on - strand at 6155.906 kb on - strand at 6155.978 kb on - strand at 6155.978 kb on - strand at 6155.978 kb on - strand at 6155.978 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 6,155,850 - +1.4 6,155,906 - +0.6 6,155,978 - -0.6 6,155,978 - -1.0 6,155,978 - +0.8 6,155,978 - +0.1
Or see this region's nucleotide sequence